SCN Proteipedia

Hg_chrom6_TN10mRNA_12110

Organism: Heterodera glycines Gene Locus: chr6:5394926-5398894 Feature type: polypeptide

Protein Sequence

Length: 724

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.851	0.867	0.904	1.0	1.289	0.637	0.888	1.036	1.535	1.363	1.046	0.812	1.228	0.877	1.071	0.947	0.725	1.088	0.637	0.812	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11420	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.732

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	endoplasmic_reticulum	—	—	—	—	—	—	—	—	0.000	—	—	0.103	0.537	0.071	0.328	0.898	0.363	0.480	0.024	0.470	0.096

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002190	2.000	2.000	Hsc_gene_19881.t1;Hsc_gene_7295.t1	Hsc_gene_7295.t1	—	O60488.2 Long-chain-fatty-acid--CoA ligase 4 [Homo sapiens]	KAI1731937.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.951\|GO:0009987_0.889\|GO:0003674_0.849\|GO:0005575_0.822\|GO:0110165_0.818\|GO:0008152_0.773\|GO:0016020_0.734\|GO:0044238_0.730\|GO:0044237_0.729\|GO:0005622_0.723\|GO:0003824_0.710\|GO:0044281_0.677\|GO:0005737_0.670\|GO:0043226_0.665\|GO:0006629_0.663\|GO:0006082_0.659\|GO:0019752_0.659\|GO:0043436_0.659\|GO:0044255_0.658\|GO:0032787_0.656\|GO:0006631_0.655\|GO:0016787_0.651\|GO:0043229_0.641\|GO:0001676_0.626\|GO:0016462_0.618\|GO:0016817_0.618\|GO:0016818_0.618\|GO:0017111_0.618\|GO:0043227_0.614\|GO:0016887_0.613\|GO:0140657_0.613\|GO:0016874_0.612\|GO:0004467_0.608\|GO:0015645_0.608\|GO:0016405_0.608\|GO:0016877_0.608\|GO:0016878_0.608\|GO:0120515_0.608\|GO:0043231_0.587\|GO:0071944_0.501	IPR000873+134-557+\|IPR020459+298-309_310-318+\|IPR020845+303-314+\|IPR025110+612-649+\|IPR042099+117-595+\|IPR045851+596-684+	—	PF00501+134-557+AMP-binding_enzyme\|PF13193+612-649+AMP-binding_enzyme_C-terminal_domain	—	PTHR43272+74-681+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-11	1.000	12-724	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.666	80289.510	6.862	3.500	26.934	10.083	44.199	55.801	14.227	12.707	49.171

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	5247.451	6164.066	7014.609	4388.827	4266.193	5422.491	7758.606	12034.688	2181.433	3677.967	3036.595

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.627	-0.569	—	0.361	0.527	1.050	-0.492	—	—	—	—	—

No JSON data available for plots.

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