Hg_chrom6_TN10mRNA_12112
Organism: Heterodera glycines Gene Locus: chr6:5407155-5409956 Feature type: polypeptideProtein Sequence
Length: 461
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.832 | 1.211 | 0.986 | 0.524 | 1.012 | 1.168 | 0.568 | 1.844 | 0.916 | 1.524 | 0.559 | 1.531 | 1.808 | 1.085 | 1.107 | 0.961 | 0.569 | 0.986 | 1.835 | 0.957 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11422
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.576
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
nucleus
|
KKWK
|
— | — | — | — |
1-22
|
0.978
|
1.000
|
0.000
|
0.000
|
0.044
|
0.078
|
0.004
|
0.074
|
0.267
|
0.366
|
0.327
|
0.037
|
0.800
|
0.234
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010513
|
1.000
|
1.000
|
Hsc_gene_7292.t1
|
Hsc_gene_7292.t1
|
— |
Q6DDP3.1 Glycerophosphocholine cholinephosphodiesterase ENPP6 [Xenopus laevis]
|
KAH7732084.1 Protein T03G6.3 [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.831|GO:0008150_0.806|GO:0005575_0.751|GO:0110165_0.751|GO:0003824_0.695|GO:0009987_0.649|GO:0016787_0.622|GO:0016020_0.594|GO:0008152_0.584|GO:0005886_0.536|GO:0071944_0.536|GO:0044238_0.505
|
IPR002591+33-341+|IPR017850+21-423_24-402+
|
— |
PF01663+33-341+Type_I_phosphodiesterase_/_nucleotide_pyrophosphatase
|
— |
PTHR10151+14-427+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-461
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
53013.490
|
6.260
|
-2.500
|
24.295
|
15.835
|
44.252
|
55.748
|
12.798
|
11.497
|
46.421
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
646.708
|
402.661
|
994.894
|
334.583
|
583.564
|
701.954
|
200.006
|
2831.583
|
461.747
|
214.569
|
320.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.076
|
-0.405
|
-1.464
|
0.771
|
— |
-1.802
|
1.907
|
-3.681
|
— | — | — | — | — |