Hg_chrom6_TN10mRNA_12114
Organism: Heterodera glycines Gene Locus: chr6:5412412-5417454 Feature type: polypeptideProtein Sequence
Length: 773
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.436 | 1.444 | 0.729 | 0.535 | 1.315 | 1.426 | 0.508 | 1.035 | 1.322 | 1.836 | 0.921 | 0.913 | 1.437 | 0.796 | 0.792 | 0.943 | 1.166 | 0.96 | 1.294 | 0.761 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11424
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.344
|
0.110
|
0.013
|
0.438
|
0.284
|
0.514
|
0.422
|
0.056
|
0.326
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010515
|
1.000
|
1.000
|
Hsc_gene_7290.t1
|
Hsc_gene_7290.t1
|
— |
Q8IV36.1 Protein HID1 [Homo sapiens]
|
KAI1731955.1 high-temperature-induced dauer-formation protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.945|GO:0110165_0.944|GO:0016020_0.889|GO:0005622_0.859|GO:0071944_0.859|GO:0005886_0.847|GO:0043226_0.834|GO:0043229_0.805|GO:0005737_0.804|GO:0043227_0.786|GO:0043231_0.753|GO:0005773_0.717|GO:0012505_0.698|GO:0005829_0.576|GO:0005794_0.574|GO:0031090_0.530|GO:0031982_0.507|GO:0043228_0.505|GO:0043232_0.505|GO:0098588_0.503
|
IPR026705+1-770_1-771+
|
— |
PF12722+1-770+High-temperature-induced_dauer-formation_protein
|
— |
PTHR21575+1-771+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
553-666
|
2.000
|
1-552;667-773
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
88733.880
|
5.786
|
-7.000
|
23.933
|
11.514
|
49.418
|
50.582
|
12.031
|
11.902
|
43.984
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1698.795
|
2147.027
|
1566.889
|
1644.552
|
2016.168
|
2611.322
|
1777.561
|
1969.226
|
1636.608
|
1054.991
|
1304.256
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.684
|
-0.522
|
0.179
|
0.262
|
0.388
|
-0.547
|
-0.512
|
— | — | — | — | — | — |
No JSON data available for plots.