Hg_chrom6_TN10mRNA_12115
Organism: Heterodera glycines Gene Locus: chr6:5417635-5419101 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.672 | 1.447 | 1.455 | 0.92 | 0.889 | 0.342 | 0.741 | 1.556 | 1.086 | 1.321 | 0.943 | 1.307 | 1.111 | 0.342 | 1.179 | 1.46 | 0.583 | 1.212 | 0.684 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11425
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.916
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.255
|
0.243
|
0.012
|
0.545
|
0.227
|
0.505
|
0.459
|
0.023
|
0.335
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010516
|
1.000
|
1.000
|
Hsc_gene_7289.t2
|
Hsc_gene_7289.t1;Hsc_gene_7289.t2
|
— |
P22128.1 Ras-related protein Rab-8 [Diplobatis ommata]
|
KAI1725461.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.901|GO:0110165_0.898|GO:0008150_0.840|GO:0005622_0.809|GO:0016020_0.777|GO:0005737_0.760|GO:0009987_0.750|GO:0043226_0.730|GO:0043229_0.712|GO:0043227_0.695|GO:0043231_0.668|GO:0071944_0.661|GO:0005886_0.646|GO:0051179_0.607|GO:0006810_0.598|GO:0051234_0.598|GO:0051641_0.552|GO:0003674_0.519|GO:0005773_0.512
|
IPR001806+1-198_8-168_9-170+|IPR005225+6-161+|IPR027417+1-175_1-194+|IPR050305+2-179+
|
SM00173+4-171+|SM00174+9-170+|SM00175+7-171+|SM00176+12-207+
|
PF00071+8-168+Ras_family
|
G3DSA:3.40.50.300:FF:001129+1-189+ras-related_protein_Rab-44_isoform_X2
|
PTHR47980+2-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-225
|
9ikq_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
25287.600
|
6.596
|
0.500
|
28.444
|
12.000
|
49.778
|
50.222
|
15.111
|
13.333
|
52.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkturquoise
|
633.227
|
484.835
|
333.924
|
497.554
|
681.984
|
587.268
|
1381.312
|
414.382
|
420.677
|
811.890
|
644.228
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.769
|
— |
0.685
|
0.424
|
-0.202
|
1.244
|
-0.609
|
1.880
|
— | — | — | — | — |
No JSON data available for plots.