Hg_chrom6_TN10mRNA_12116
Organism: Heterodera glycines Gene Locus: chr6:5419775-5422742 Feature type: polypeptideProtein Sequence
Length: 592
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.061 | 1.218 | 0.829 | 1.223 | 0.535 | 0.953 | 0.583 | 1.436 | 1.089 | 1.552 | 0.435 | 1.49 | 2.111 | 0.91 | 1.138 | 0.917 | 0.858 | 1.126 | 1.559 | 0.596 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11426
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.881
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.073
|
0.155
|
0.020
|
0.198
|
0.721
|
0.561
|
0.663
|
0.008
|
0.263
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010517
|
1.000
|
1.000
|
Hsc_gene_7288.t2
|
Hsc_gene_7288.t1;Hsc_gene_7288.t2
|
— |
A5WVX9.1 Palmitoyltransferase ZDHHC17 [Danio rerio]
|
KAI1725462.1 DHHC palmitoyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016409
|
GO:0008150_0.911|GO:0009987_0.826|GO:0005575_0.805|GO:0110165_0.805|GO:0071944_0.776|GO:0005886_0.761|GO:0016020_0.761|GO:0065007_0.647|GO:0005622_0.619|GO:0050789_0.598|GO:0005737_0.582|GO:0043226_0.578|GO:0003674_0.559|GO:0043229_0.555|GO:0050794_0.546|GO:0043227_0.543|GO:0043231_0.528|GO:0005773_0.527|GO:0012505_0.513
|
IPR001594+411-533+|IPR002110+37-92_63-92_63-95_97-126_97-129_99-158_130-159_130-162_163-193_171-246_198-227+|IPR036770+26-259_34-251+
|
SM00248+63-92_97-126_130-159_163-193_198-227+
|
PF01529+411-533+DHHC_palmitoyltransferase|PF12796+37-92_99-158_171-246+Ankyrin_repeats_(3_copies)
|
— |
PTHR24161+24-563+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33
|
1.000
|
34-592
|
3eu9_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
66542.220
|
7.862
|
12.500
|
19.088
|
14.527
|
39.696
|
60.304
|
11.318
|
7.770
|
51.182
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
919.142
|
1214.994
|
1185.499
|
889.542
|
865.500
|
1091.864
|
2102.475
|
1189.053
|
318.875
|
579.993
|
468.086
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.266
|
-0.587
|
-0.305
|
— |
0.350
|
0.955
|
— |
0.964
|
— | — | — | — | — |
No JSON data available for plots.