Hg_chrom6_TN10mRNA_12117
Organism: Heterodera glycines Gene Locus: chr6:5423464-5426341 Feature type: polypeptideProtein Sequence
Length: 568
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.105 | 0.491 | 0.704 | 0.789 | 0.822 | 1.445 | 0.503 | 2.113 | 0.665 | 1.594 | 0.347 | 1.036 | 2.494 | 0.948 | 1.796 | 1.333 | 0.491 | 0.987 | 1.219 | 0.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11427
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.938
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRECEWERHFRKRKCRL
|
8-32
|
0.998
|
17-39
|
0.914
|
— | — |
0.000
|
— | — |
0.203
|
0.154
|
0.005
|
0.152
|
0.392
|
0.280
|
0.478
|
0.007
|
0.571
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010518
|
1.000
|
1.000
|
Hsc_gene_7287.t1
|
Hsc_gene_7287.t1
|
— | — |
KAI1725463.1 strabismus protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007275|GO:0016020
|
GO:0008150_0.861|GO:0005575_0.847|GO:0110165_0.847|GO:0016020_0.823|GO:0005886_0.811|GO:0071944_0.811|GO:0032501_0.630|GO:0032502_0.568|GO:0048856_0.568|GO:0007275_0.539|GO:0048731_0.532|GO:0043226_0.524|GO:0007399_0.514
|
IPR009539+53-561_71-557+
|
— |
PF06638+71-557+Strabismus_protein
|
— |
PTHR20886+53-561+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-568
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
64812.530
|
9.216
|
25.000
|
24.120
|
16.021
|
44.190
|
55.810
|
15.317
|
8.803
|
45.775
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
450.318
|
819.518
|
468.630
|
575.960
|
488.631
|
497.328
|
1599.708
|
251.935
|
146.236
|
97.324
|
118.286
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.036
|
-0.646
|
0.407
|
-0.270
|
— |
1.695
|
-1.092
|
2.810
|
— | — | — | — | — |
No JSON data available for plots.