Hg_chrom6_TN10mRNA_12123
Organism: Heterodera glycines Gene Locus: chr6:5447656-5451802 Feature type: polypeptideProtein Sequence
Length: 634
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 1.284 | 0.746 | 1.033 | 0.631 | 2.346 | 0.901 | 1.104 | 0.736 | 1.13 | 0.287 | 0.928 | 1.139 | 1.456 | 0.901 | 1.284 | 0.646 | 1.41 | 0.849 | 0.649 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11433
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.582
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
— | — | — |
4-24
|
0.989
|
1-27
|
0.985
|
1.000
|
1.000
|
1.000
|
0.144
|
0.041
|
0.006
|
0.211
|
0.205
|
0.473
|
0.253
|
0.058
|
0.917
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010522
|
1.000
|
1.000
|
Hsc_gene_7281.t2
|
Hsc_gene_7281.t1;Hsc_gene_7281.t2
|
— | — |
KAI1725469.1 ImmunoGlobulin-like Cell adhesion Molecule family [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.906|GO:0110165_0.903|GO:0016020_0.821|GO:0071944_0.817|GO:0005886_0.787|GO:0008150_0.624|GO:0009987_0.559
|
IPR003598+294-393+|IPR007110+261-388+|IPR013783+280-396+|IPR036179+292-502+|IPR051275+111-569+
|
SM00408+294-393+
|
— | — |
PTHR11640+111-569+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-634
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
68719.470
|
6.138
|
-3.000
|
16.404
|
9.621
|
44.006
|
55.994
|
8.517
|
7.886
|
57.886
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
1013.780
|
1110.028
|
978.717
|
868.846
|
1823.450
|
1811.922
|
1820.220
|
1259.073
|
9.995
|
800.694
|
461.823
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.409
|
-0.490
|
— |
1.037
|
— | — |
-0.631
|
0.674
|
-6.458
|
6.661
|
— | — |
-6.104
|