Hg_chrom6_TN10mRNA_12124
Organism: Heterodera glycines Gene Locus: chr6:5471105-5475388 Feature type: polypeptideProtein Sequence
Length: 810
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.703 | 1.177 | 1.01 | 1.022 | 0.988 | 0.791 | 0.661 | 1.111 | 1.097 | 1.618 | 0.748 | 1.452 | 1.166 | 1.116 | 1.033 | 1.446 | 0.769 | 0.86 | 0.57 | 0.871 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11434
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.113
|
0.360
|
0.200
|
0.658
|
0.497
|
0.588
|
0.346
|
0.091
|
0.279
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010523
|
1.000
|
1.000
|
Hsc_gene_7280.t1
|
Hsc_gene_7280.t1
|
— |
Q68J42.1 Hormone-sensitive lipase [Sus scrofa]
|
KAI1731965.1 alpha/beta hydrolase fold domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008203|GO:0016042|GO:0016298|GO:0016787
|
GO:0005575_0.783|GO:0008150_0.780|GO:0110165_0.778|GO:0003674_0.736|GO:0009987_0.679|GO:0005622_0.578|GO:0003824_0.561|GO:0065007_0.547|GO:0016020_0.535|GO:0016787_0.526|GO:0008152_0.507
|
IPR010468+32-332+|IPR013094+348-490+|IPR029058+308-519_347-803_648-798+
|
— |
PF06350+32-332+Hormone-sensitive_lipase_(HSL)_N-terminus|PF07859+348-490+alpha/beta_hydrolase_fold
|
— |
PTHR23025+28-808+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
551-657
|
2.000
|
1-550;658-810
|
4xvc_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
90071.980
|
6.238
|
-3.000
|
23.704
|
10.123
|
46.667
|
53.333
|
12.222
|
11.481
|
51.481
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkorange
|
1627.821
|
1611.885
|
1175.758
|
784.554
|
1311.599
|
3615.317
|
5372.856
|
3630.970
|
395.473
|
261.509
|
318.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.684
|
-1.176
|
-0.475
|
0.710
|
1.477
|
0.581
|
— |
0.710
|
— | — | — | — | — |
No JSON data available for plots.