SCN Proteipedia

Hg_chrom6_TN10mRNA_12125

Organism: Heterodera glycines Gene Locus: chr6:5476115-5477534 Feature type: polypeptide

Protein Sequence

Length: 290

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.083	1.123	0.815	0.951	0.862	0.884	0.698	1.034	0.536	0.932	0.993	1.014	2.107	2.387	0.704	1.182	0.904	0.418	1.326	0.811	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11435	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.912

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	RKSK	—	—	—	—	—	—	0.000	—	—	0.753	0.107	0.004	0.444	0.159	0.140	0.154	0.044	0.061	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010524	1.000	1.000	Hsc_gene_7279.t1	Hsc_gene_7279.t1	—	A3FEM2.1 Protein FEV [Danio rerio]	XP_023024185.1 transcriptional regulator ERG homolog, partial [Leptinotarsa decemlineata]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0006357\|GO:0043565	GO:0008150_0.894\|GO:0009987_0.775\|GO:0005575_0.757\|GO:0110165_0.757\|GO:0065007_0.735\|GO:0050789_0.724\|GO:0050794_0.718\|GO:0003674_0.660\|GO:0005622_0.653\|GO:0005488_0.639\|GO:0043226_0.628\|GO:0043229_0.615\|GO:0016020_0.614\|GO:0008152_0.607\|GO:0043170_0.599\|GO:0019222_0.598\|GO:0009058_0.594\|GO:0031323_0.590\|GO:0044237_0.590\|GO:0009059_0.588\|GO:0010467_0.588\|GO:0044249_0.588\|GO:0060255_0.582\|GO:0044238_0.570\|GO:0009889_0.567\|GO:0031326_0.567\|GO:0010468_0.566\|GO:0010556_0.566\|GO:0032502_0.556\|GO:0048856_0.556\|GO:0048518_0.551\|GO:0080090_0.549\|GO:0006139_0.538\|GO:0097159_0.536\|GO:0043227_0.535\|GO:0003676_0.529\|GO:0016070_0.528\|GO:0032774_0.528\|GO:0034654_0.528\|GO:0090304_0.528\|GO:0141187_0.528\|GO:0019219_0.522\|GO:0043231_0.522\|GO:0048522_0.522\|GO:0032501_0.519\|GO:0006351_0.514\|GO:0051252_0.512\|GO:0006355_0.507\|GO:2001141_0.507	IPR000418+71-154_72-85_72-150_73-149_74-82_94-112_113-131_116-131_132-150+\|IPR036388+41-163+\|IPR036390+69-162+\|IPR046328+42-153+	SM00413+71-154+	PF00178+73-149+Ets-domain	G3DSA:1.10.10.10:FF:000039+42-161+Friend_leukemia_integration_1_transcription_factor	PTHR11849+42-153+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-62	1.000	63-290	4iri_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.925	32046.260	7.588	4.000	21.724	14.138	43.793	56.207	12.069	9.655	56.207

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	18.576	26.167	84.195	16.079	11.222	6.198	47.066	13.793	3.792	1.656	2.572

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.455	-0.840	-2.277	—	—	2.937	—	1.917	—	—	—	—	—

No JSON data available for plots.

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