SCN Proteipedia

Hg_chrom6_TN10mRNA_12126

Organism: Heterodera glycines Gene Locus: chr6:5477648-5482905 Feature type: polypeptide

Protein Sequence

Length: 929

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.801	1.152	0.724	0.779	0.879	1.187	0.5	1.292	1.005	1.76	0.538	1.266	1.645	1.304	1.428	1.661	0.635	0.701	0.828	0.317	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11436	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	cell_membrane	chloroplast	KRIKKKRKDKTTALRLGA	—	—	50-70	0.976	—	0.762	0.020	1.000	—	0.199	0.044	0.019	0.345	0.289	0.340	0.308	0.042	0.720	0.226

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010525	1.000	1.000	Hsc_gene_7278.t1	Hsc_gene_7278.t1	—	Q6QMY6.1 Tsukushi [Rattus norvegicus]	KAI1725568.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.965\|GO:0005575_0.939\|GO:0110165_0.939\|GO:0009987_0.917\|GO:0065007_0.897\|GO:0050789_0.878\|GO:0050794_0.868\|GO:0003674_0.837\|GO:0005488_0.797\|GO:0048518_0.771\|GO:0008152_0.753\|GO:0043170_0.753\|GO:0044238_0.748\|GO:0019222_0.745\|GO:0044237_0.738\|GO:0031323_0.733\|GO:0060255_0.727\|GO:0050896_0.556\|GO:0016020_0.555\|GO:0032501_0.551\|GO:0051716_0.533\|GO:0032502_0.531\|GO:0048856_0.531\|GO:0005622_0.523\|GO:0051179_0.517\|GO:0071840_0.515\|GO:0007154_0.512\|GO:0016043_0.510\|GO:0005515_0.504\|GO:0023052_0.504\|GO:0006810_0.494\|GO:0051234_0.494\|GO:0007275_0.491\|GO:0007165_0.490\|GO:0048519_0.485\|GO:0048731_0.480\|GO:0009058_0.474\|GO:0048869_0.472\|GO:0030154_0.470\|GO:0044249_0.466\|GO:0048523_0.466\|GO:0010646_0.465\|GO:0048468_0.463\|GO:0009059_0.460\|GO:0007399_0.458\|GO:0023051_0.457\|GO:0048583_0.456\|GO:0006950_0.455\|GO:0010467_0.452\|GO:0009966_0.449\|GO:0051239_0.446\|GO:0022008_0.445\|GO:0009889_0.443\|GO:0048513_0.443\|GO:0031326_0.442\|GO:0007166_0.440\|GO:0010468_0.439\|GO:0010556_0.439\|GO:0009653_0.437\|GO:0048699_0.436\|GO:0050793_0.432\|GO:0030182_0.431\|GO:0033036_0.430\|GO:0051128_0.430\|GO:0040007_0.427\|GO:0048666_0.427\|GO:0030030_0.426\|GO:0120036_0.426\|GO:0009892_0.422\|GO:0042592_0.421\|GO:0048589_0.420\|GO:0031324_0.419\|GO:0045595_0.418\|GO:0051240_0.418\|GO:0010605_0.417\|GO:0031175_0.416\|GO:0031344_0.416\|GO:0048585_0.416\|GO:0120035_0.416\|GO:0010648_0.415\|GO:0000902_0.414\|GO:0005737_0.414\|GO:0009968_0.414\|GO:0023057_0.414\|GO:0051241_0.413\|GO:0009890_0.412\|GO:0010558_0.412\|GO:0031327_0.412\|GO:0031099_0.411\|GO:0048878_0.411\|GO:0007417_0.410\|GO:0048871_0.410\|GO:0051093_0.410\|GO:0009611_0.409\|GO:0009887_0.408\|GO:0010975_0.408\|GO:0048667_0.408\|GO:0048812_0.408\|GO:0048858_0.408\|GO:0120039_0.408\|GO:0010629_0.407\|GO:0042246_0.407\|GO:0001654_0.406\|GO:0001816_0.406\|GO:0001817_0.406\|GO:0006629_0.406\|GO:0007409_0.406\|GO:0007420_0.406\|GO:0007423_0.406\|GO:0044281_0.406\|GO:0048880_0.406\|GO:0051129_0.406\|GO:0060322_0.406\|GO:0061564_0.406\|GO:0150063_0.406\|GO:0031345_0.405\|GO:0042060_0.405\|GO:0045596_0.405\|GO:0016055_0.404\|GO:0030111_0.404\|GO:0010876_0.403\|GO:0030900_0.403\|GO:0090596_0.403\|GO:1901615_0.403\|GO:0001818_0.399\|GO:0006066_0.399\|GO:0006869_0.399\|GO:0008202_0.399\|GO:0008203_0.399\|GO:0010977_0.399\|GO:0015850_0.399\|GO:0015918_0.399\|GO:0016125_0.399\|GO:0021537_0.399\|GO:0021540_0.399\|GO:0021543_0.399\|GO:0021591_0.399\|GO:0021670_0.399\|GO:0021761_0.399\|GO:0021766_0.399\|GO:0021952_0.399\|GO:0021953_0.399\|GO:0021954_0.399\|GO:0021955_0.399\|GO:0021960_0.399\|GO:0022038_0.399\|GO:0030178_0.399\|GO:0030301_0.399\|GO:0032905_0.399\|GO:0032908_0.399\|GO:0032911_0.399\|GO:0033344_0.399\|GO:0036446_0.399\|GO:0042303_0.399\|GO:0042490_0.399\|GO:0042632_0.399\|GO:0042633_0.399\|GO:0042634_0.399\|GO:0042635_0.399\|GO:0043010_0.399\|GO:0043583_0.399\|GO:0048592_0.399\|GO:0048593_0.399\|GO:0048839_0.399\|GO:0055088_0.399\|GO:0055092_0.399\|GO:0060113_0.399\|GO:0060119_0.399\|GO:0060122_0.399\|GO:0061073_0.399\|GO:0071604_0.399\|GO:0071634_0.399\|GO:0071635_0.399\|GO:0097009_0.399\|GO:1902652_0.399\|GO:1904760_0.399\|GO:1904761_0.399\|GO:0019838_0.393\|GO:0019955_0.387\|GO:0050431_0.387\|GO:0005576_0.363\|GO:0048522_0.354\|GO:0005615_0.352	IPR001611+169-190_241-299_264-285_335-395+\|IPR003591+167-190_214-237_239-261_263-285_286-308_309-332_357-381+\|IPR032675+59-348_349-461+\|IPR050541+264-726+	SM00369+167-190_214-237_239-261_263-285_286-308_309-332_357-381+	PF13855+241-299_335-395+Leucine_rich_repeat	—	PTHR24369+264-726+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	492-590;876-929	2.000	1-491;591-875	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.893	104057.370	8.530	24.000	22.390	10.657	47.470	52.530	13.132	9.257	49.193

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	720.245	879.741	917.951	431.641	176.173	201.476	255.335	501.656	56.139	1847.478	1079.761

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.168	-1.164	-0.980	-1.324	—	0.351	1.216	-0.833	-5.165	—	-3.018	—	—

Properties

Window size Custom profile

Custom patterns

Back to Browser