Hg_chrom6_TN10mRNA_12128
Organism: Heterodera glycines Gene Locus: chr6:5485701-5488762 Feature type: polypeptideProtein Sequence
Length: 658
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.884 | 0.967 | 0.314 | 0.963 | 1.052 | 0.416 | 1.748 | 1.587 | 1.684 | 0.461 | 0.983 | 2.026 | 0.731 | 1.706 | 1.281 | 0.698 | 0.783 | 1.403 | 0.581 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11438
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.939
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— |
KRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.423
|
0.432
|
0.011
|
0.485
|
0.082
|
0.104
|
0.083
|
0.306
|
0.066
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010526
|
1.000
|
1.000
|
Hsc_gene_7276.t1
|
Hsc_gene_7275.t1;Hsc_gene_7276.t1
|
— |
G1SPE9.2 Dihydroxyacetone phosphate acyltransferase [Oryctolagus cuniculus]
|
KAI6235004.1 PlsC domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008374|GO:0016746|GO:0044255
|
GO:0005575_0.853|GO:0110165_0.849|GO:0008150_0.807|GO:0016020_0.800|GO:0005622_0.719|GO:0043226_0.682|GO:0005737_0.675|GO:0043229_0.669|GO:0043227_0.640|GO:0043231_0.640|GO:0009987_0.639|GO:0003674_0.595|GO:0008152_0.543|GO:0044238_0.516|GO:0044237_0.509|GO:0009058_0.505
|
IPR002123+139-268_142-271+|IPR022284+37-526_43-641+|IPR041728+118-324+|IPR045520+281-613+
|
SM00563+142-271+
|
PF01553+139-268+Acyltransferase|PF19277+281-613+Glycerol-3-phosphate_acyltransferase_C-terminal_region
|
— |
PTHR12563+37-526+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-658
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
76072.390
|
8.078
|
13.500
|
25.988
|
14.590
|
47.112
|
52.888
|
14.894
|
11.094
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
366.711
|
409.460
|
476.229
|
455.074
|
506.911
|
623.198
|
757.473
|
342.393
|
141.148
|
159.474
|
151.620
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
0.313
|
0.288
|
-0.970
|
1.285
|
— | — | — | — | — |
No JSON data available for plots.