SCN Proteipedia

Hg_chrom6_TN10mRNA_12129

Organism: Heterodera glycines Gene Locus: chr6:5489078-5491938 Feature type: polypeptide

Protein Sequence

Length: 368

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.664	1.074	1.087	1.312	0.725	1.533	0.388	0.951	1.57	1.689	0.494	1.119	2.114	0.888	1.386	1.087	0.668	1.029	0.836	0.32	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11439	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	endoplasmic_reticulum	—	—	57-77	0.973	—	—	—	—	0.000	—	—	0.392	0.322	0.110	0.313	0.812	0.367	0.283	0.025	0.097	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010527	1.000	1.000	Hsc_gene_7274.t1	—	—	Q5ZI25.1 Transmembrane protein 129 [Gallus gallus]	KAI1725570.1 putative transmembrane protein precursor domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020\|GO:0016567\|GO:0061630	GO:0008150_0.962\|GO:0005575_0.932\|GO:0110165_0.932\|GO:0009987_0.911\|GO:0071944_0.878\|GO:0005886_0.872\|GO:0016020_0.872\|GO:0003674_0.860\|GO:0050896_0.860\|GO:0051179_0.834\|GO:0051716_0.831\|GO:0006810_0.826\|GO:0051234_0.826\|GO:0005622_0.781\|GO:0042221_0.746\|GO:0043226_0.743\|GO:0005737_0.738\|GO:0006950_0.736\|GO:0051641_0.736\|GO:0008152_0.734\|GO:0019538_0.734\|GO:0043170_0.734\|GO:0044238_0.734\|GO:0005773_0.724\|GO:0043227_0.724\|GO:0043229_0.724\|GO:0043231_0.724\|GO:0012505_0.720\|GO:0036211_0.711\|GO:0043412_0.711\|GO:0033036_0.707\|GO:0071705_0.707\|GO:0051649_0.706\|GO:0008104_0.701\|GO:0070727_0.701\|GO:1901698_0.700\|GO:0003824_0.695\|GO:0045184_0.692\|GO:0015031_0.691\|GO:0033554_0.689\|GO:0009056_0.688\|GO:0046907_0.688\|GO:0009057_0.685\|GO:0006508_0.682\|GO:0016567_0.682\|GO:0030163_0.682\|GO:0032446_0.682\|GO:0043687_0.682\|GO:0070647_0.682\|GO:0140096_0.681\|GO:0006886_0.679\|GO:0016740_0.677\|GO:0000209_0.676\|GO:0010498_0.674\|GO:0034976_0.674\|GO:0043632_0.674\|GO:0051603_0.674\|GO:0016746_0.672\|GO:0006511_0.670\|GO:0019941_0.670\|GO:0030970_0.670\|GO:0032527_0.670\|GO:0036503_0.670\|GO:1903513_0.670\|GO:0016755_0.668\|GO:0019787_0.668\|GO:0004842_0.665\|GO:0061659_0.664\|GO:0061630_0.661\|GO:0031090_0.627\|GO:0005783_0.603\|GO:0031984_0.579\|GO:0042175_0.566\|GO:0005789_0.564\|GO:0098827_0.564	IPR018801+11-365_23-359+	—	PF10272+23-359+Putative_transmembrane_protein_precursor	—	PTHR31322+11-365+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-368	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.604	42066.830	7.010	2.500	22.283	11.685	44.565	55.435	11.957	10.326	46.467

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkturquoise	914.606	1860.358	763.836	891.072	1000.558	1095.957	897.960	1132.712	742.815	578.372	648.848

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.515	-1.199	0.332	0.135	0.146	-0.280	—	—	—	—	—	—	—

No JSON data available for plots.

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