Hg_chrom6_TN10mRNA_12130
Organism: Heterodera glycines Gene Locus: chr6:5492435-5495139 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 1.151 | 0.525 | 0.853 | 0.584 | 0.899 | 0.466 | 0.928 | 1.283 | 1.56 | 0.5 | 0.97 | 2.463 | 0.714 | 1.136 | 1.296 | 0.811 | 1.218 | 2.538 | 1.213 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11440
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.441
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — |
0.806
|
0.425
|
7.000
|
— |
0.062
|
0.029
|
0.031
|
0.093
|
0.384
|
0.678
|
0.550
|
0.028
|
0.746
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004393
|
1.000
|
2.000
|
Hsc_gene_7273.t1;Hsc_gene_7273.t2
|
Hsc_gene_7273.t1;Hsc_gene_7273.t2
|
— |
Q5U239.1 Transmembrane protein 145 [Xenopus laevis]
|
KAI1725573.1 rhodopsin-like GPCR transmembrane domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007186|GO:0019236
|
— |
IPR019336+199-418+|IPR047831+12-441+|IPR053880+31-167+
|
— |
PF10192+199-418+GPR180/TMEM145,_transmembrane_domain|PF21892+31-167+TMEM145,_N-terminal_domain
|
— |
PTHR23252+12-441+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-485
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
55980.070
|
9.024
|
16.500
|
17.113
|
18.144
|
39.588
|
60.412
|
10.722
|
6.392
|
47.010
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
343.409
|
343.320
|
477.169
|
239.299
|
106.301
|
94.291
|
327.392
|
289.724
|
73.698
|
743.081
|
456.203
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.243
|
-0.658
|
-0.885
|
-1.200
|
— |
1.806
|
1.523
|
— | — | — | — | — | — |