Hg_chrom6_TN10mRNA_12132
Organism: Heterodera glycines Gene Locus: chr6:5505671-5511444 Feature type: polypeptideProtein Sequence
Length: 862
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 0.971 | 0.844 | 0.44 | 0.58 | 0.892 | 1.036 | 1.044 | 1.237 | 1.129 | 0.65 | 2.252 | 1.74 | 0.982 | 0.876 | 1.193 | 0.932 | 1.143 | 1.696 | 1.058 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11442
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKHTTQAVADRKKPL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.076
|
0.162
|
0.011
|
0.131
|
0.154
|
0.442
|
0.214
|
0.010
|
0.811
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004394
|
2.000
|
1.000
|
Hsc_gene_7271.t2
|
Hsc_gene_7271.t1;Hsc_gene_7271.t2
|
— |
Q9D687.1 Sodium-dependent neutral amino acid transporter B(0)AT1 [Mus musculus]
|
KAI6201587.1 Transporter [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.942|GO:0005575_0.803|GO:0110165_0.802|GO:0009987_0.783|GO:0051179_0.774|GO:0006810_0.768|GO:0051234_0.768|GO:0016020_0.739|GO:0003674_0.733|GO:0055085_0.706|GO:0071944_0.675|GO:0005886_0.665|GO:0005215_0.662|GO:0022857_0.662|GO:0006865_0.548|GO:0006811_0.526|GO:0034220_0.526|GO:0003333_0.516
|
IPR000175+98-689_108-692_109-687_117-138_133-147_146-165_190-216_300-317_382-402_497-516_576-596_616-636+|IPR037272+109-687+
|
— |
PF00209+109-687+Sodium:neurotransmitter_symporter_family
|
— |
PTHR11616+98-689+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-68;728-862
|
1.000
|
69-727
|
7v61_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
95578.890
|
8.118
|
13.000
|
18.794
|
14.153
|
40.487
|
59.513
|
10.673
|
8.121
|
52.552
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4423.115
|
7790.191
|
4413.575
|
3781.560
|
2496.784
|
3272.665
|
3523.632
|
7343.637
|
2148.918
|
5506.174
|
4067.350
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.049
|
-1.180
|
-0.115
|
-0.630
|
0.405
|
— |
1.061
|
-0.918
|
— | — | — | — | — |
No JSON data available for plots.