Hg_chrom6_TN10mRNA_12139
Organism: Heterodera glycines Gene Locus: chr6:5533830-5537768 Feature type: polypeptideProtein Sequence
Length: 744
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 1.282 | 0.538 | 0.463 | 1.165 | 1.31 | 0.688 | 1.008 | 1.105 | 0.908 | 1.059 | 1.818 | 1.344 | 1.318 | 1.591 | 1.382 | 0.97 | 0.631 | 1.137 | 0.277 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11447
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.763
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
PAGKRRA,RRTDKRTKIGRRTKF,KRQLPFPVAKRRQKTK,KKGPTNARINNGTNQRKAK,RKAKGKADITERRTDKRTK,KRKMMRQKRHCDGIRQRRN,RRRLKISPKQKMAVAKMGAMKRKMMRQKR
|
34-74
|
0.952
|
— | — | — | — |
0.000
|
— | — |
0.156
|
0.035
|
0.041
|
0.253
|
0.145
|
0.049
|
0.301
|
0.120
|
0.633
|
0.470
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004397
|
2.000
|
1.000
|
Hsc_gene_7264.t1
|
Hsc_gene_7264.t1
|
— | — | — |
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;258-389;537-744
|
2.000
|
41-257;390-536
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
83797.430
|
10.567
|
43.500
|
26.747
|
9.274
|
52.957
|
47.043
|
16.801
|
9.946
|
49.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
118.824
|
302.689
|
253.923
|
79.625
|
111.103
|
201.329
|
63.053
|
141.820
|
12.529
|
77.879
|
49.872
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.486
|
-2.064
|
-1.562
|
0.450
|
0.871
|
-1.665
|
-0.617
|
-1.026
|
— | — | — | — | — |
No JSON data available for plots.