Hg_chrom6_TN10mRNA_12140
Organism: Heterodera glycines Gene Locus: chr6:5533830-5537768 Feature type: polypeptideProtein Sequence
Length: 718
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.81 | 1.263 | 0.532 | 0.48 | 1.207 | 1.321 | 0.696 | 1.045 | 1.083 | 0.922 | 1.076 | 1.884 | 1.354 | 1.178 | 1.649 | 1.413 | 0.959 | 0.57 | 1.178 | 0.246 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11447
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.763
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
PAGKRRA,RRTDKRTKIGRRTKF,KRQLPFPVAKRRQKTK,KKGPTNARINNGTNQRKAK,RKAKGKADITERRTDKRTK,KRKMMRQKRHCDGIRQRRN,RRRLKISPKQKMAVAKMGAMKRKMMRQKR
|
34-74
|
0.952
|
— | — | — | — |
0.000
|
— | — |
0.163
|
0.034
|
0.036
|
0.253
|
0.150
|
0.051
|
0.299
|
0.112
|
0.644
|
0.447
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004397
|
2.000
|
1.000
|
Hsc_gene_7264.t1
|
— | — | — | — |
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;258-382;511-718
|
2.000
|
41-257;383-510
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
81054.230
|
10.602
|
43.500
|
27.437
|
9.331
|
53.760
|
46.240
|
17.270
|
10.167
|
48.189
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
118.824
|
302.689
|
253.923
|
79.625
|
111.103
|
201.329
|
63.053
|
141.820
|
12.529
|
77.879
|
49.872
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.486
|
-2.064
|
-1.562
|
0.450
|
0.871
|
-1.665
|
-0.617
|
-1.026
|
— | — | — | — | — |
No JSON data available for plots.