Hg_chrom6_TN10mRNA_12141
Organism: Heterodera glycines Gene Locus: chr6:5538861-5541432 Feature type: polypeptideProtein Sequence
Length: 249
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 1.494 | 0.657 | 0.554 | 1.473 | 1.854 | 0.669 | 1.406 | 1.249 | 1.085 | 1.034 | 0.945 | 2.343 | 1.081 | 0.738 | 0.459 | 0.922 | 0.73 | 1.236 | 0.709 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11448
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_7263
|
— |
18-Not_Clustered
|
0.929
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
mitochondrion
|
— | — | — | — | — | — |
1-19
|
0.969
|
1.000
|
0.000
|
0.000
|
0.156
|
0.674
|
0.038
|
0.254
|
0.564
|
0.177
|
0.120
|
0.024
|
0.307
|
0.460
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010531
|
1.000
|
1.000
|
Hsc_gene_7263.t1
|
Hsc_gene_7263.t1
|
— |
Q95003.1 Glutathione peroxidase 3 [Caenorhabditis elegans]
|
QFZ79401.1 glutathione peroxidase [Heterodera schachtii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979
|
GO:0008150_0.842|GO:0005575_0.821|GO:0110165_0.819|GO:0009987_0.702|GO:0050896_0.682|GO:0003674_0.651|GO:0051716_0.598|GO:0042221_0.583|GO:0016020_0.582|GO:0005622_0.571|GO:0005737_0.569|GO:0043226_0.538|GO:0070887_0.521|GO:0003824_0.501
|
IPR000889+45-241_47-220_54-220_55-171_73-90_110-126_197-206+|IPR029759+75-90+|IPR029760+113-120+|IPR036249+54-221+
|
— |
PF00255+55-171+Glutathione_peroxidase
|
G3DSA:3.40.30.10:FF:000283+39-239+Glutathione_peroxidase
|
PTHR11592+47-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
232-249
|
1.000
|
1-231
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
28767.670
|
6.156
|
-1.500
|
25.703
|
15.261
|
48.193
|
51.807
|
13.253
|
12.450
|
42.972
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
3266.270
|
2789.076
|
3602.186
|
3596.795
|
5167.962
|
8694.829
|
1104.097
|
6009.705
|
312.540
|
2443.784
|
1530.393
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.140
|
0.230
|
0.107
|
0.490
|
0.767
|
-2.968
|
-0.643
|
-2.299
|
-3.074
|
3.644
|
— | — | — |