Hg_chrom6_TN10mRNA_12143
Organism: Heterodera glycines Gene Locus: chr6:5543311-5546425 Feature type: polypeptideProtein Sequence
Length: 589
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.73 | 1.027 | 1.05 | 0.0 | 1.302 | 1.132 | 0.627 | 1.104 | 1.434 | 1.078 | 0.437 | 1.598 | 1.273 | 1.077 | 1.732 | 1.116 | 0.891 | 1.029 | 1.698 | 0.849 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11450
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.575
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-17
|
0.952
|
0.854
|
0.000
|
0.000
|
0.224
|
0.374
|
0.059
|
0.340
|
0.195
|
0.069
|
0.176
|
0.086
|
0.396
|
0.840
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010533
|
1.000
|
1.000
|
Hsc_gene_7261.t1
|
Hsc_gene_7261.t1
|
— | — |
KAI1725583.1 fibronectin type III domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.830|GO:0005575_0.822|GO:0110165_0.820|GO:0009987_0.700|GO:0003674_0.685|GO:0065007_0.566|GO:0050789_0.549|GO:0032501_0.526|GO:0050794_0.526|GO:0016020_0.505
|
IPR003961+154-240_156-248_156-253_258-360_260-346_267-357_363-449_365-463_470-555_472-570_481-553+|IPR013783+149-251_263-366_367-464_470-571+|IPR036116+156-360_376-562+|IPR050713+142-547+
|
SM00060+154-240_260-346_363-449_470-555+
|
— | — |
PTHR46957+142-547+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
552-589
|
1.000
|
1-551
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
67635.410
|
5.682
|
-6.500
|
27.165
|
11.885
|
49.236
|
50.764
|
13.582
|
13.582
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
672.880
|
693.888
|
335.894
|
401.178
|
453.441
|
1267.875
|
2597.220
|
699.964
|
161.987
|
403.813
|
300.173
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.278
|
-0.927
|
0.367
|
0.145
|
1.498
|
1.045
|
-0.967
|
2.037
|
— | — | — | — | — |