Hg_chrom6_TN10mRNA_12144
Organism: Heterodera glycines Gene Locus: chr6:5551289-5553582 Feature type: polypeptideProtein Sequence
Length: 487
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.194 | 0.411 | 1.062 | 0.445 | 1.053 | 0.489 | 1.848 | 1.323 | 1.609 | 0.591 | 1.57 | 1.654 | 1.027 | 1.383 | 1.555 | 0.909 | 0.716 | 1.58 | 0.785 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11451
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.645
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.093
|
0.073
|
0.016
|
0.108
|
0.229
|
0.171
|
0.094
|
0.028
|
0.800
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010534
|
1.000
|
1.000
|
Hsc_gene_7260.t1
|
Hsc_gene_5141.t1;Hsc_gene_7260.t1
|
— |
Q6XL69.1 Melanopsin [Rutilus rutilus]
|
KAI1725584.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.911|GO:0009987_0.859|GO:0065007_0.843|GO:0050789_0.822|GO:0050896_0.782|GO:0050794_0.776|GO:0051716_0.745|GO:0003674_0.736|GO:0005575_0.718|GO:0110165_0.718|GO:0023052_0.702|GO:0007154_0.700|GO:0007165_0.672|GO:0060089_0.637|GO:0038023_0.631|GO:0007186_0.619|GO:0016020_0.589|GO:0004888_0.555|GO:0032501_0.507|GO:0005488_0.501
|
IPR000276+103-343_177-198_228-251_284-308_325-351+|IPR017452+75-343+
|
— |
PF00001+103-343+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24232+54-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
405-487
|
1.000
|
1-404
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
55350.360
|
10.268
|
37.000
|
19.302
|
14.374
|
44.969
|
55.031
|
14.374
|
4.928
|
47.639
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
brown
|
120.504
|
77.148
|
199.494
|
128.189
|
47.950
|
98.294
|
452.455
|
230.488
|
6.556
|
59.529
|
36.826
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.139
|
0.595
|
-0.527
|
-1.449
|
1.050
|
2.213
|
1.127
|
1.115
|
— |
4.497
|
— | — | — |
No JSON data available for plots.