Hg_chrom6_TN10mRNA_12145
Organism: Heterodera glycines Gene Locus: chr6:5554064-5556192 Feature type: polypeptideProtein Sequence
Length: 516
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 0.856 | 0.211 | 0.869 | 0.711 | 0.596 | 0.877 | 0.678 | 1.593 | 2.2 | 0.47 | 1.368 | 2.153 | 0.522 | 1.345 | 1.301 | 0.826 | 0.91 | 1.044 | 0.513 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11452
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.857
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
5-45
|
0.883
|
— | — | — | — |
0.000
|
— | — |
0.053
|
0.089
|
0.019
|
0.119
|
0.316
|
0.425
|
0.427
|
0.070
|
0.765
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010535
|
1.000
|
1.000
|
Hsc_gene_7259.t1
|
Hsc_gene_7259.t1
|
— |
Q6PXP3.2 Solute carrier family 2, facilitated glucose transporter member 7 [Homo sapiens]
|
KAI6187894.1 MFS domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.909|GO:0005575_0.902|GO:0110165_0.898|GO:0016020_0.842|GO:0009987_0.838|GO:0005886_0.797|GO:0071944_0.797|GO:0006810_0.768|GO:0051179_0.768|GO:0051234_0.768|GO:0003674_0.712|GO:0055085_0.703|GO:0005215_0.625|GO:0022857_0.625|GO:0005622_0.601|GO:0043226_0.599|GO:0043229_0.567|GO:0008643_0.542|GO:0034219_0.541|GO:0015749_0.539|GO:0008645_0.538|GO:0005737_0.535|GO:0043227_0.511
|
IPR005828+19-467+|IPR005829+324-340+|IPR020846+10-460+|IPR036259+4-472_6-464+|IPR045263+5-473+
|
— |
PF00083+19-467+Sugar_(and_other)_transporter
|
— |
PTHR23503+5-473+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-516
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
57149.750
|
10.188
|
25.500
|
16.473
|
12.209
|
36.628
|
63.372
|
11.047
|
5.426
|
45.736
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
salmon
|
158.619
|
133.850
|
176.051
|
103.011
|
54.382
|
34.486
|
87.103
|
326.952
|
46.465
|
315.669
|
200.296
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.514
|
-0.665
|
-0.952
|
-0.643
|
1.345
|
3.142
|
-1.767
|
— | — | — | — | — |
No JSON data available for plots.