Hg_chrom6_TN10mRNA_12146
Organism: Heterodera glycines Gene Locus: chr6:5560300-5563424 Feature type: polypeptideProtein Sequence
Length: 521
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 1.071 | 0.558 | 0.596 | 0.768 | 0.935 | 0.731 | 0.48 | 1.408 | 1.556 | 0.494 | 1.919 | 1.386 | 0.664 | 1.567 | 1.344 | 1.007 | 1.076 | 1.476 | 0.96 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11453
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.681
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
93-117
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.087
|
0.084
|
0.013
|
0.115
|
0.177
|
0.258
|
0.121
|
0.007
|
0.859
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010536
|
1.000
|
1.000
|
Hsc_gene_7258.t1
|
Hsc_gene_7258.t1
|
— |
Q18904.1 Probable G-protein coupled receptor npr-8 [Caenorhabditis elegans]
|
KAI1732080.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0004983|GO:0007186|GO:0016020
|
GO:0008150_0.932|GO:0009987_0.891|GO:0065007_0.798|GO:0005575_0.785|GO:0110165_0.785|GO:0050789_0.773|GO:0050896_0.772|GO:0003674_0.769|GO:0050794_0.752|GO:0051716_0.743|GO:0023052_0.720|GO:0007154_0.719|GO:0016020_0.703|GO:0071944_0.700|GO:0007165_0.697|GO:0005886_0.686|GO:0007186_0.664|GO:0060089_0.640|GO:0038023_0.637|GO:0004888_0.617|GO:0005488_0.612|GO:0004930_0.570
|
IPR000276+69-93_84-211_102-123_147-169_153-169_186-207_284-449_388-412_431-457+|IPR000611+94-106_436-445_447-460+|IPR017452+84-449+
|
— |
PF00001+84-211_284-449+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24235+292-479+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
516-521
|
1.000
|
1-515
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
58691.110
|
9.810
|
19.500
|
19.578
|
11.132
|
43.378
|
56.622
|
11.900
|
7.678
|
48.560
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
995.601
|
1420.346
|
1671.019
|
399.147
|
119.123
|
143.871
|
236.697
|
1512.888
|
511.162
|
1908.725
|
1309.770
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.968
|
-1.956
|
-1.775
|
0.286
|
0.729
|
3.295
|
-2.536
|
— | — |
-3.569
|
— | — |
No JSON data available for plots.