Hg_chrom6_TN10mRNA_12148
Organism: Heterodera glycines Gene Locus: chr6:5564164-5565845 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 0.879 | 0.687 | 0.802 | 1.211 | 1.416 | 0.519 | 2.326 | 0.775 | 1.414 | 1.013 | 1.881 | 0.969 | 1.174 | 1.187 | 1.453 | 0.858 | 0.484 | 0.894 | 0.684 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11455
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KNGHVKEKEKSERKKGTTERVPKGG
|
— | — |
64-84
|
0.716
|
— | — |
0.000
|
— | — |
0.359
|
0.253
|
0.009
|
0.743
|
0.186
|
0.091
|
0.141
|
0.012
|
0.248
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010537
|
1.000
|
1.000
|
Hsc_gene_7257.t1
|
Hsc_gene_7257.t1
|
— | — |
KAI1713360.1 MIF4G domain-containing protein [Ditylenchus destructor]
|
No
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR051367+49-299+
|
— | — | — |
PTHR23254+49-299+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;230-344
|
1.000
|
23-229
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
39001.370
|
8.489
|
13.000
|
28.198
|
11.628
|
52.907
|
47.093
|
17.151
|
11.047
|
45.930
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
259.156
|
288.187
|
722.220
|
487.123
|
192.328
|
180.300
|
83.745
|
440.739
|
28.921
|
214.125
|
134.752
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.097
|
0.620
|
-0.460
|
-1.374
|
— |
-1.097
|
1.183
|
-2.253
|
— | — | — | — | — |
No JSON data available for plots.