Hg_chrom6_TN10mRNA_12150
Organism: Heterodera glycines Gene Locus: chr6:5567676-5571476 Feature type: polypeptideProtein Sequence
Length: 505
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.151 | 1.243 | 0.612 | 1.024 | 0.957 | 1.523 | 0.919 | 0.594 | 0.748 | 1.177 | 0.69 | 0.582 | 1.705 | 0.838 | 2.182 | 0.877 | 0.779 | 0.87 | 0.457 | 0.524 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11457
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
SRNSASPRKN,KRRRNNQQKEKRKSRTK,RKNVPRGTREETKAQRK,RREERRIARAERRERRFRE
|
— | — | — | — | — | — |
0.001
|
— | — |
0.070
|
0.042
|
0.014
|
0.250
|
0.263
|
0.354
|
0.389
|
0.007
|
0.705
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010539
|
1.000
|
1.000
|
Hsc_gene_7255.t1
|
Hsc_gene_7255.t1
|
— |
H2L006.1 Tetraspanin-14 [Caenorhabditis elegans]
|
KAF7632242.1 Tetraspanin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.889|GO:0009987_0.864|GO:0005575_0.749|GO:0110165_0.749|GO:0016020_0.705|GO:0003674_0.654|GO:0071944_0.634|GO:0065007_0.625|GO:0005886_0.616|GO:0005488_0.583|GO:0050789_0.568|GO:0050794_0.548|GO:0005515_0.523
|
IPR008952+171-289_181-292+|IPR018499+61-310_61-319+
|
— |
PF00335+61-319+Tetraspanin_family
|
— |
PTHR19282+61-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;333-505
|
1.000
|
4-332
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
56460.360
|
10.528
|
34.000
|
25.545
|
9.703
|
47.723
|
52.277
|
16.436
|
9.109
|
50.297
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
magenta
|
1103.782
|
1810.246
|
1043.217
|
899.271
|
1459.232
|
3650.687
|
861.313
|
1571.518
|
332.726
|
343.695
|
338.993
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.026
|
-1.147
|
— |
0.666
|
1.339
|
-2.075
|
-1.322
|
-0.726
|
— | — |
3.822
|
— | — |
No JSON data available for plots.