Hg_chrom6_TN10mRNA_12151
Organism: Heterodera glycines Gene Locus: chr6:5577414-5578380 Feature type: polypeptideProtein Sequence
Length: 156
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.596 | 1.491 | 2.214 | 0.663 | 1.175 | 0.329 | 0.687 | 0.962 | 1.14 | 1.386 | 0.68 | 2.64 | 1.603 | 0.37 | 1.962 | 0.824 | 0.946 | 0.486 | 0.0 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11458
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.361
|
0.254
|
0.124
|
0.571
|
0.128
|
0.231
|
0.230
|
0.031
|
0.542
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010540
|
1.000
|
1.000
|
Hsc_gene_7254.t1
|
Hsc_gene_7254.t1
|
— |
Q40302.3 Calmodulin [Macrocystis pyrifera]
|
KAI1732083.1 EF hand domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.715|GO:0110165_0.712|GO:0005622_0.673|GO:0008150_0.657|GO:0003674_0.597|GO:0005737_0.570|GO:0005488_0.565
|
IPR002048+15-50_19-47_19-77_22-80_51-86_55-83_88-123_91-154_92-120_92-154_124-156_128-156+|IPR011992+19-154+|IPR018247+28-40_101-113_137-149+|IPR050145+17-152+
|
SM00054+19-47_55-83_92-120_128-156+
|
PF13499+22-80_91-154+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000003+14-156+Calmodulin_A
|
PTHR23050+17-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-156
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
17994.190
|
4.683
|
-6.500
|
35.256
|
9.615
|
54.487
|
45.513
|
16.026
|
19.231
|
48.077
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
609.728
|
1317.230
|
1409.682
|
552.164
|
185.846
|
235.091
|
313.128
|
1817.364
|
257.083
|
288.309
|
274.926
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.132
|
-1.392
|
-1.244
|
-1.603
|
— |
0.427
|
2.852
|
-2.395
|
— | — | — | — | — |
No JSON data available for plots.