SCN Proteipedia

Hg_chrom6_TN10mRNA_12152

Organism: Heterodera glycines Gene Locus: chr6:5578391-5592629 Feature type: polypeptide

Protein Sequence

Length: 2,399

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.931	1.183	0.887	0.647	1.348	1.101	0.769	1.146	1.167	1.42	0.827	1.324	1.818	0.729	1.429	0.911	0.745	0.651	0.93	0.527	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11459	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-Not_Clustered	0.401

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RKKR,RKMCGRKAWTEKKMKS,RRQWYHLPGGHRRRIN,KKLIENFVIGGAKRRRFV,KRTATIQIQAAFRGWKCRK,RREISAMLNRTDYAGRKAK,KRFVYKTGEGIFEDRRERR	38-67	0.913	—	—	—	—	0.000	—	—	0.220	0.118	0.016	0.631	0.127	0.208	0.242	0.014	0.439	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010541	1.000	1.000	Hsc_gene_7251.t1	Hsc_gene_7251.t1;Hsc_gene_7253.t1	—	Q9QZZ4.2 Unconventional myosin-XV [Mus musculus]	CDJ80716.1 Myosin head and IQ calmodulin-binding region and Unconventional myosin plant kinesin protein non-motor protein conserved region MyTH4 and Variant SH3 and FERM central domain containing protein, partial [Haemonchus contortus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003774\|GO:0005515\|GO:0005524\|GO:0005856\|GO:0016459	GO:0008150_0.885\|GO:0005575_0.762\|GO:0110165_0.754\|GO:0009987_0.735\|GO:0016020_0.649\|GO:0043226_0.637\|GO:0005622_0.626\|GO:0043229_0.551\|GO:0071944_0.516\|GO:0005886_0.503	IPR000048+710-732_714-731_733-755_737-752+\|IPR000299+2069-2396+\|IPR000857+880-1029_929-986_1907-2063_1955-2061+\|IPR001452+1748-1814_1751-1813_1753-1809+\|IPR001609+1-708_6-702_79-676_101-126_162-189_399-427+\|IPR011993+2282-2394+\|IPR019748+2172-2279+\|IPR019749+2065-2287+\|IPR027417+14-754+\|IPR036028+1749-1810+\|IPR036961+15-631+\|IPR038185+870-1032_1897-2064+\|IPR051567+82-2389+	SM00015+710-732_733-755+\|SM00139+880-1029_1907-2063+\|SM00242+6-702+\|SM00295+2065-2287+\|SM00326+1751-1813+	PF00063+79-676+Myosin_head_(motor_domain)\|PF00612+714-731_737-752+IQ_calmodulin-binding_motif\|PF00784+929-986_1955-2061+MyTH4_domain\|PF07653+1753-1809+Variant_SH3_domain	—	PTHR22692+82-2389+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	766-823;1207-1486	3.000	1-765;824-1206;1487-2399	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.646	272128.230	6.995	15.500	27.720	11.838	48.020	51.980	14.756	12.964	45.311

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	greenyellow	753.657	466.130	371.480	236.528	415.522	712.292	476.353	278.537	362.094	1916.861	1250.532

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.556	-1.116	-0.543	0.780	0.794	-0.571	-1.464	0.918	—	—	—	—	—

No JSON data available for plots.

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