Hg_chrom6_TN10mRNA_12154
Organism: Heterodera glycines Gene Locus: chr6:5592865-5594491 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.063 | 0.797 | 0.779 | 0.394 | 0.81 | 0.952 | 1.327 | 1.0 | 1.27 | 1.274 | 1.169 | 1.345 | 1.349 | 0.604 | 1.633 | 0.898 | 0.749 | 0.952 | 0.44 | 0.42 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11461
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.805
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RDRLQRISGGPNPIRKKPMVRKRISGGPIRKVSRTVGGRLKVAGAGTSKAA
|
112-132
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.541
|
0.150
|
0.026
|
0.460
|
0.061
|
0.068
|
0.203
|
0.020
|
0.058
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010543
|
1.000
|
1.000
|
Hsc_gene_7250.t1
|
Hsc_gene_7250.t1
|
— | — |
KAF7632187.1 FoP_duplication domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.907|GO:0003674_0.872|GO:0009987_0.847|GO:0005488_0.773|GO:0097159_0.730|GO:0003676_0.714|GO:0003723_0.714|GO:0060090_0.650|GO:0005575_0.638|GO:0110165_0.629|GO:0005622_0.566|GO:0016020_0.548|GO:0043226_0.538|GO:0043229_0.534
|
IPR000504+193-263+|IPR012677+184-271+|IPR025715+283-349_295-348+|IPR035979+184-275+|IPR051229+86-348+
|
SM00360+193-263+|SM01218+283-349+
|
PF13865+295-348+C-terminal_duplication_domain_of_Friend_of_PRMT1
|
— |
PTHR19965+86-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
276-350
|
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
38200.190
|
10.789
|
26.500
|
26.857
|
8.857
|
44.857
|
55.143
|
17.714
|
9.143
|
49.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
4599.272
|
5595.639
|
4468.926
|
4490.376
|
4452.591
|
3853.394
|
2532.491
|
6168.137
|
5063.734
|
4488.434
|
4734.991
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.554
|
-0.455
|
0.116
|
— |
-0.193
|
-0.595
|
0.574
|
-1.142
|
— | — | — | — | — |
No JSON data available for plots.