SCN Proteipedia

Hg_chrom6_TN10mRNA_12157

Organism: Heterodera glycines Gene Locus: chr6:5606978-5610203 Feature type: polypeptide

Protein Sequence

Length: 700

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.096	0.864	0.623	0.345	1.333	1.685	0.884	0.714	0.413	1.158	0.887	1.765	0.952	1.401	1.108	1.959	0.89	0.476	0.22	0.294	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11463	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.528

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRRLTAFAIHKREQK,KKKQNQQQQNTTKTERR,RREQQNNGNQIRRPKRG	—	—	54-74	0.974	—	—	0.000	—	—	0.910	0.131	0.018	0.302	0.033	0.023	0.026	0.021	0.042	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004398	2.000	1.000	Hsc_gene_7246.t2	Hsc_gene_7246.t1;Hsc_gene_7246.t2;Hsc_gene_7246.t3;Hsc_gene_7246.t4	—	G5EGQ5.1 Mblk-1-related factor 1 [Caenorhabditis elegans]	KAI1725596.1 helix-turn-helix, psq domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0008150_0.956\|GO:0009987_0.926\|GO:0065007_0.916\|GO:0050789_0.908\|GO:0050794_0.898\|GO:0008152_0.823\|GO:0019222_0.823\|GO:0031323_0.823\|GO:0044237_0.823\|GO:0044238_0.811\|GO:0080090_0.811\|GO:0043170_0.805\|GO:0060255_0.805\|GO:0009058_0.797\|GO:0009059_0.797\|GO:0010467_0.797\|GO:0044249_0.797\|GO:0009889_0.789\|GO:0031326_0.789\|GO:0006139_0.788\|GO:0016070_0.788\|GO:0090304_0.788\|GO:0034654_0.786\|GO:0010468_0.784\|GO:0010556_0.784\|GO:0141187_0.783\|GO:0032774_0.781\|GO:0019219_0.775\|GO:0051252_0.775\|GO:0006351_0.764\|GO:2001141_0.759\|GO:0006355_0.757\|GO:0003674_0.712\|GO:0005488_0.712\|GO:0005575_0.693\|GO:0110165_0.693\|GO:0005622_0.646\|GO:0016020_0.646\|GO:0043226_0.619\|GO:0043229_0.610\|GO:0043227_0.563\|GO:0006366_0.552\|GO:0006357_0.548\|GO:0043231_0.534	IPR007889+368-404_580-632_592-630+\|IPR009057+361-406_584-632+	—	PF05225+368-404_592-630+helix-turn-helix,_Psq_domain	G3DSA:1.10.10.60:FF:000019+589-630+Ligand-dependent_corepressor_isoform_1	PTHR21545+535-656+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-114;239-389;436-700	2.000	115-238;390-435	2cob_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.923	75210.810	7.207	4.000	24.143	6.143	53.571	46.429	12.714	11.429	54.571

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	393.347	596.197	702.649	299.955	235.338	562.628	1189.416	480.023	54.226	155.397	112.038

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.128	-1.119	-0.382	1.271	1.092	—	1.451	—	—	—	—	—

No JSON data available for plots.

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