Hg_chrom6_TN10mRNA_12158
Organism: Heterodera glycines Gene Locus: chr6:5610249-5611366 Feature type: polypeptideProtein Sequence
Length: 171
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 0.544 | 0.638 | 0.403 | 0.975 | 1.05 | 1.462 | 0.292 | 1.429 | 0.632 | 0.975 | 2.064 | 1.137 | 1.237 | 1.671 | 1.003 | 0.863 | 0.886 | 1.35 | 1.376 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11464
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.433
|
0.404
|
0.026
|
0.633
|
0.043
|
0.014
|
0.043
|
0.009
|
0.260
|
0.324
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010545
|
1.000
|
1.000
|
Hsc_gene_7245.t1
|
Hsc_gene_7245.t1
|
— |
A2AJ76.1 Hemicentin-2 [Mus musculus]
|
KAF7634266.1 Ig-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.890|GO:0110165_0.884|GO:0008150_0.755|GO:0003674_0.657|GO:0009987_0.651|GO:0005622_0.634|GO:0005737_0.598|GO:0043226_0.586|GO:0016020_0.517|GO:0005488_0.508
|
IPR007110+51-127+|IPR013098+51-139+|IPR013783+45-142+|IPR036179+51-142+
|
— |
PF07679+51-139+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000107+50-142+Myosin,_light_chain_kinase_a
|
— |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-171
|
8s9p_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
19047.830
|
10.120
|
9.500
|
24.561
|
11.111
|
43.275
|
56.725
|
15.205
|
9.357
|
49.708
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
317.307
|
441.279
|
513.807
|
126.573
|
76.208
|
505.255
|
35.695
|
873.756
|
94.467
|
352.653
|
242.002
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.939
|
-1.913
|
-0.762
|
2.743
|
-3.813
|
0.681
|
-4.468
|
— | — | — | — | — |
No JSON data available for plots.