Hg_chrom6_TN10mRNA_12160
Organism: Heterodera glycines Gene Locus: chr6:5623204-5624278 Feature type: polypeptideProtein Sequence
Length: 159
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.804 | 1.901 | 1.144 | 0.0 | 1.258 | 1.129 | 0.674 | 1.572 | 1.258 | 1.02 | 1.906 | 1.48 | 0.699 | 0.726 | 0.385 | 0.629 | 1.65 | 1.048 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11466
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
GKGTARRKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.580
|
0.316
|
0.052
|
0.582
|
0.215
|
0.281
|
0.245
|
0.014
|
0.090
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010547
|
1.000
|
1.000
|
Hsc_gene_7243.t1
|
Hsc_gene_7243.t1;Hsc_gene_7243.t2
|
— |
Q18885.1 Transcription factor BTF3 homolog [Caenorhabditis elegans]
|
KAF7627308.1 Transcription factor BTF3 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0005575_0.826|GO:0110165_0.818|GO:0005622_0.793|GO:0008150_0.665|GO:0005737_0.647|GO:0043226_0.554|GO:0016020_0.539|GO:0043229_0.533|GO:0003674_0.504
|
IPR002715+36-101_39-95+|IPR038187+51-108+|IPR039370+1-154+
|
SM01407+39-95+
|
PF01849+39-95+NAC_domain
|
G3DSA:2.20.70.30:FF:000001+51-108+Transcription_factor_BTF3_homolog
|
PTHR10351+1-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-159
|
0.000
|
— |
8p2k_Nb
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
17501.850
|
8.577
|
3.500
|
31.447
|
5.660
|
58.491
|
41.509
|
17.610
|
13.836
|
52.201
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
3684.925
|
1338.900
|
2110.920
|
4828.320
|
5244.026
|
4093.715
|
3467.359
|
2349.429
|
4969.893
|
3606.874
|
4191.025
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.428
|
1.713
|
1.302
|
0.087
|
-0.342
|
-0.228
|
-0.908
|
0.706
|
— | — | — | — | — |
No JSON data available for plots.