Hg_chrom6_TN10mRNA_12165
Organism: Heterodera glycines Gene Locus: chr6:5648115-5652748 Feature type: polypeptideProtein Sequence
Length: 782
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.595 | 0.803 | 0.884 | 1.146 | 2.43 | 1.016 | 0.731 | 1.471 | 1.108 | 0.95 | 1.55 | 1.881 | 0.853 | 0.861 | 1.644 | 0.621 | 0.734 | 0.426 | 0.393 | 0.715 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11471
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.911
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
TKRKR,KKEKKKEREMRKQKE,KKKLKLKKGTRRKRTP,RKENKKYEERKDEGKKEKK,KKYEERKDEGKKEKKKERE,RKDEGKKEKKKEREMRKQK,KKKEREMRKQKEEERGEKR,RKQKEEERGEKRAEGGKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.762
|
0.046
|
0.005
|
0.764
|
0.142
|
0.059
|
0.132
|
0.097
|
0.151
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010552
|
1.000
|
1.000
|
Hsc_gene_7238.t1
|
Hsc_gene_7238.t1
|
— | — |
KAI1732031.1 MYND finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.959|GO:0009987_0.817|GO:0005575_0.762|GO:0110165_0.762|GO:0005622_0.740|GO:0043226_0.707|GO:0016020_0.686|GO:0071840_0.683|GO:0043229_0.680|GO:0016043_0.675|GO:0003674_0.643|GO:0043227_0.606|GO:0065007_0.605|GO:0050789_0.602|GO:0050794_0.580|GO:0043231_0.560|GO:0032502_0.535|GO:0048856_0.535|GO:0005737_0.522|GO:0006325_0.504|GO:0006338_0.504
|
IPR002893+38-76+|IPR011990+397-465+|IPR046341+24-266+|IPR050869+24-419+
|
— |
PF01753+38-76+MYND_finger
|
— |
PTHR12197+24-419+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11;467-782
|
1.000
|
12-466
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
91048.210
|
6.679
|
2.500
|
40.665
|
8.951
|
56.905
|
43.095
|
21.228
|
19.437
|
39.003
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
1019.585
|
664.691
|
2023.389
|
795.296
|
451.334
|
985.263
|
290.934
|
1981.679
|
204.766
|
1609.892
|
1007.695
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.375
|
— |
-1.238
|
-0.848
|
1.140
|
-1.749
|
0.903
|
-2.625
|
-3.094
|
— | — | — | — |
No JSON data available for plots.