Hg_chrom6_TN10mRNA_12166
Organism: Heterodera glycines Gene Locus: chr6:5653305-5654801 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.879 | 0.541 | 1.374 | 0.2 | 1.453 | 1.044 | 1.107 | 0.291 | 1.292 | 0.943 | 1.85 | 2.394 | 1.453 | 0.671 | 0.356 | 0.664 | 1.334 | 0.793 | 0.0 | 0.513 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11472
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKVKKVKKKSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.670
|
0.184
|
0.014
|
0.700
|
0.208
|
0.082
|
0.418
|
0.001
|
0.207
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002324
|
3.000
|
1.000
|
Hsc_gene_7237.t1
|
Hsc_gene_7237.t1
|
— |
P19625.1 Myosin regulatory light chain 1 [Caenorhabditis elegans]
|
KAF7634251.1 Myosin regulatory light chain [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.790|GO:0110165_0.769|GO:0008150_0.761|GO:0005622_0.678|GO:0005737_0.644|GO:0043226_0.616|GO:0043229_0.562
|
IPR002048+25-60_29-56_29-57_94-129_98-126+|IPR011992+22-160+|IPR018247+38-50+|IPR050403+1-167+
|
SM00054+29-57_98-126+
|
PF00036+29-56+EF_hand
|
G3DSA:1.10.238.10:FF:000007+5-91+Putative_myosin_regulatory_light_chain_sqh
|
PTHR23049+1-167+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18
|
1.000
|
19-172
|
8act_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.556
|
18850.550
|
4.939
|
-3.500
|
30.814
|
7.558
|
50.000
|
50.000
|
14.535
|
16.279
|
48.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
33606.224
|
34242.508
|
41402.462
|
15087.641
|
7997.636
|
22664.182
|
2092.893
|
132027.241
|
5759.458
|
46889.673
|
29262.438
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.320
|
-1.348
|
-0.948
|
1.517
|
-3.425
|
2.440
|
-5.836
|
-3.119
|
— | — | — | — |
No JSON data available for plots.