Hg_chrom6_TN10mRNA_12167
Organism: Heterodera glycines Gene Locus: chr6:5655663-5660527 Feature type: polypeptideProtein Sequence
Length: 479
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.728 | 1.457 | 0.835 | 0.936 | 1.009 | 0.749 | 0.572 | 1.67 | 1.021 | 1.467 | 1.202 | 1.474 | 1.74 | 0.803 | 1.236 | 0.865 | 0.616 | 0.822 | 1.445 | 1.044 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11473
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
3-23
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.101
|
0.056
|
0.002
|
0.159
|
0.287
|
0.148
|
0.940
|
0.022
|
0.109
|
0.344
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010553
|
1.000
|
1.000
|
Hsc_gene_7236.t2
|
Hsc_gene_7236.t1;Hsc_gene_7236.t2
|
— |
O19071.1 Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Sus scrofa]
|
KAI1725537.1 n-acetylglucosaminyltransferase II (MGAT2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005795|GO:0008455|GO:0009312|GO:0016020
|
GO:0003674_0.867|GO:0003824_0.777|GO:0008150_0.761|GO:0016740_0.701|GO:0140096_0.688|GO:0016757_0.659|GO:0016758_0.658|GO:0008194_0.650|GO:0008375_0.650|GO:0008455_0.650|GO:0140103_0.650|GO:0008152_0.614|GO:0044238_0.587|GO:0009987_0.577|GO:0009058_0.575
|
IPR007754+20-457_106-452+|IPR029044+132-398_133-401+
|
— |
PF05060+106-452+N-acetylglucosaminyltransferase_II_(MGAT2)
|
— |
PTHR12871+20-457+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
445-479
|
1.000
|
1-444
|
5vcs_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
55569.190
|
9.328
|
24.000
|
27.975
|
15.031
|
46.973
|
53.027
|
17.328
|
10.647
|
44.050
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
623.479
|
946.395
|
883.991
|
763.591
|
774.770
|
657.304
|
553.771
|
664.580
|
338.436
|
507.243
|
434.897
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.328
|
-0.447
|
— | — |
-0.223
|
-0.238
|
— | — | — | — | — | — | — |
No JSON data available for plots.