Hg_chrom6_TN10mRNA_12168
Organism: Heterodera glycines Gene Locus: chr6:5660680-5661669 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.851 | 1.176 | 0.343 | 1.575 | 1.148 | 0.592 | 0.249 | 0.774 | 0.74 | 0.528 | 1.756 | 1.106 | 1.626 | 1.015 | 1.279 | 1.223 | 0.829 | 1.148 | 0.732 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11474
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.542
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.772
|
0.212
|
0.007
|
0.564
|
0.328
|
0.131
|
0.156
|
0.032
|
0.101
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010554
|
1.000
|
1.000
|
Hsc_gene_7235.t1
|
Hsc_gene_7235.t1
|
— |
P52478.1 Ubiquitin-conjugating enzyme E2 1 [Caenorhabditis elegans]
|
KAI1732029.1 ubiquitin-conjugating enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.929|GO:0003674_0.771|GO:0008152_0.710|GO:0043170_0.710|GO:0044238_0.693|GO:0019538_0.661|GO:0005575_0.655|GO:0003824_0.633|GO:0140096_0.625|GO:0016740_0.615|GO:0110165_0.613|GO:0016746_0.610|GO:0016755_0.610|GO:0019787_0.610|GO:0004842_0.605|GO:0009987_0.579|GO:0005622_0.534
|
IPR000608+4-150_7-145_8-144+|IPR016135+1-154_2-151+|IPR023313+77-92+|IPR050113+2-150+
|
SM00212+7-150+
|
PF00179+8-144+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000004+1-151+Ubiquitin-conjugating_enzyme_E2_A
|
PTHR24067+2-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
139-201
|
1.000
|
1-138
|
1z3d_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
22444.640
|
4.142
|
-14.500
|
24.876
|
8.458
|
53.731
|
46.269
|
8.955
|
15.920
|
57.214
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
977.944
|
414.237
|
687.348
|
709.583
|
897.354
|
1539.047
|
1509.247
|
2332.932
|
1056.284
|
452.636
|
711.342
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
0.640
|
0.155
|
0.307
|
0.793
|
— |
0.492
|
-0.483
|
— | — | — | — | — |
No JSON data available for plots.