Hg_chrom6_TN10mRNA_12169
Organism: Heterodera glycines Gene Locus: chr6:5661937-5663969 Feature type: polypeptideProtein Sequence
Length: 435
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.535 | 1.337 | 0.794 | 0.634 | 0.996 | 1.12 | 0.766 | 0.805 | 1.635 | 0.87 | 1.219 | 1.758 | 1.341 | 0.796 | 1.361 | 0.92 | 0.791 | 1.324 | 0.884 | 1.014 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11475
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.501
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— | — |
31-58
|
0.995
|
45-73
|
0.969
|
— | — |
0.000
|
— | — |
0.279
|
0.159
|
0.132
|
0.549
|
0.165
|
0.697
|
0.634
|
0.099
|
0.374
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010555
|
1.000
|
1.000
|
Hsc_gene_7234.t1
|
Hsc_gene_7234.t1
|
R160.1a;R160.1b
|
P35603.2 AP-2 complex subunit mu [Caenorhabditis elegans]
|
XP_020303551.1 AP-2 complex subunit mu [Loa loa];EFO25885.2 AP-2 complex subunit mu [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006886|GO:0016192|GO:0030131
|
GO:0005575_0.846|GO:0110165_0.840|GO:0008150_0.816|GO:0005622_0.789|GO:0016020_0.760|GO:0009987_0.755|GO:0043226_0.710|GO:0005737_0.703|GO:0043229_0.675|GO:0043227_0.659|GO:0043231_0.630|GO:0071944_0.593|GO:0005886_0.559|GO:0051179_0.554|GO:0051234_0.546|GO:0006810_0.535|GO:0051641_0.532
|
IPR001392+1-435_12-32_98-125_159-187_241-268_310-325_350-361+|IPR011012+1-138+|IPR018240+157-177_261-275+|IPR022775+2-126+|IPR028565+158-435_168-434+|IPR036168+157-434+|IPR043512+166-434+|IPR043532+1-140+|IPR050431+1-434+
|
— |
PF00928+158-435+Adaptor_complexes_medium_subunit_family|PF01217+2-126+Clathrin_adaptor_complex_small_chain
|
G3DSA:3.30.450.60:FF:000002+1-140+AP-2_complex_subunit_mu,_putative
|
PTHR10529+1-434+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-435
|
8t1o_M
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
49709.460
|
9.930
|
22.500
|
26.667
|
11.034
|
48.046
|
51.954
|
16.322
|
10.345
|
47.126
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1105.905
|
643.829
|
959.724
|
937.438
|
1085.223
|
1060.237
|
1666.549
|
1174.030
|
1102.561
|
1188.777
|
1151.828
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.346
|
0.405
|
— |
0.179
|
— |
0.663
|
— |
0.648
|
— | — | — | — | — |
No JSON data available for plots.