Hg_chrom6_TN10mRNA_12171
Organism: Heterodera glycines Gene Locus: chr6:5666969-5670179 Feature type: polypeptideProtein Sequence
Length: 591
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.748 | 1.141 | 1.231 | 1.05 | 1.382 | 0.954 | 0.544 | 1.269 | 1.391 | 1.235 | 0.615 | 1.095 | 1.175 | 1.041 | 1.485 | 1.16 | 0.61 | 0.846 | 0.781 | 0.896 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11476
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.297
|
0.240
|
0.008
|
0.610
|
0.221
|
0.528
|
0.349
|
0.032
|
0.342
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002325
|
2.000
|
2.000
|
Hsc_gene_7233.t1;Hsc_gene_7233.t2
|
Hsc_gene_7233.t1;Hsc_gene_7233.t2
|
— |
A8QCE4.1 Lateral signaling target protein 2 homolog [Brugia malayi]
|
KAI1725534.1 FYVE zinc finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0005575_0.875|GO:0110165_0.873|GO:0008150_0.851|GO:0009987_0.787|GO:0005622_0.767|GO:0003674_0.715|GO:0005737_0.703|GO:0016020_0.662|GO:0071944_0.608|GO:0005886_0.594|GO:0043226_0.593|GO:0043229_0.580|GO:0065007_0.574|GO:0043227_0.561|GO:0005488_0.548|GO:0043231_0.540|GO:0050789_0.534|GO:0050794_0.516
|
IPR000306+448-517_452-514+|IPR011011+452-520+|IPR013083+449-518+|IPR017455+456-516+|IPR043269+450-512+|IPR051118+1-304+
|
SM00064+448-517+
|
PF01363+452-514+FYVE_zinc_finger
|
— |
PTHR46465+1-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
571-591
|
1.000
|
1-570
|
9f45_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
67281.020
|
5.056
|
-14.500
|
28.934
|
10.829
|
49.408
|
50.592
|
13.875
|
15.059
|
48.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1294.296
|
1565.139
|
1232.402
|
1061.357
|
1136.166
|
1474.217
|
1764.341
|
1654.519
|
577.412
|
1521.434
|
1116.853
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.574
|
-0.698
|
— | — |
0.390
|
0.268
|
— |
0.234
|
— | — | — | — | — |
No JSON data available for plots.