Hg_chrom6_TN10mRNA_12176
Organism: Heterodera glycines Gene Locus: chr6:5681161-5682979 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 0.964 | 0.942 | 0.0 | 1.641 | 0.93 | 0.74 | 1.295 | 0.576 | 0.98 | 0.628 | 1.829 | 0.72 | 1.196 | 1.903 | 1.332 | 1.189 | 0.942 | 0.0 | 1.372 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11480
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.438
|
0.322
|
0.010
|
0.656
|
0.105
|
0.264
|
0.110
|
0.016
|
0.308
|
0.306
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004400
|
2.000
|
1.000
|
Hsc_gene_7229.t1
|
Hsc_gene_7229.t1
|
C09B8.6c
|
P04792.2 Heat shock protein beta-1 [Homo sapiens]
|
KAF7639629.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.854|GO:0005575_0.794|GO:0110165_0.794|GO:0005622_0.746|GO:0009987_0.719|GO:0003674_0.668|GO:0005737_0.665|GO:0050896_0.585|GO:0005488_0.582|GO:0065007_0.575|GO:0050789_0.567|GO:0043226_0.545|GO:0016020_0.538|GO:0050794_0.538|GO:0005515_0.534|GO:0008152_0.530|GO:0043229_0.523
|
IPR001436+5-188_106-126_128-141_164-185+|IPR002068+93-193_108-188+|IPR008978+86-185_100-187+
|
— |
PF00011+108-188+Hsp20/alpha_crystallin_family
|
G3DSA:2.60.40.790:FF:000038+95-185+BMA-HSP-25,_isoform_c
|
PTHR45640+5-188+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-193
|
0.000
|
— |
6dv5_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
21900.330
|
6.351
|
-0.500
|
31.088
|
9.845
|
55.440
|
44.560
|
16.062
|
15.026
|
50.259
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2071.046
|
3688.684
|
3070.526
|
1691.883
|
1420.851
|
2654.583
|
1492.705
|
6459.666
|
573.038
|
951.460
|
789.279
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.494
|
-1.262
|
-0.751
|
-0.284
|
0.916
|
-0.819
|
1.183
|
-1.972
|
— |
1.721
|
— | — | — |
No JSON data available for plots.