Hg_chrom6_TN10mRNA_12177
Organism: Heterodera glycines Gene Locus: chr6:5682887-5685554 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.842 | 1.043 | 0.627 | 1.665 | 0.517 | 0.442 | 0.616 | 1.034 | 1.456 | 1.678 | 0.575 | 2.434 | 1.82 | 0.531 | 1.196 | 1.379 | 0.735 | 0.784 | 2.918 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11481
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.859
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRHSSIVCGPSDRKKES
|
— | — | — | — | — | — |
0.000
|
— | — |
0.049
|
0.040
|
0.014
|
0.143
|
0.211
|
0.509
|
0.424
|
0.003
|
0.825
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010558
|
1.000
|
1.000
|
Hsc_gene_7228.t2
|
Hsc_gene_7228.t1;Hsc_gene_7228.t2
|
— |
Q5WRN1.2 Tetraspanin-21 [Caenorhabditis elegans]
|
KAI1725480.1 tetraspanin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.844|GO:0110165_0.843|GO:0008150_0.826|GO:0009987_0.778|GO:0016020_0.752|GO:0005886_0.655|GO:0071944_0.655|GO:0065007_0.553|GO:0003674_0.513|GO:0043226_0.501
|
IPR000301+7-263+|IPR008952+109-219_111-222+|IPR018499+13-249_14-240+
|
— |
PF00335+13-249+Tetraspanin_family
|
— |
PTHR19282+14-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-290
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
33099.930
|
8.600
|
12.000
|
18.276
|
15.172
|
38.621
|
61.379
|
11.724
|
6.552
|
47.241
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkturquoise
|
460.028
|
347.602
|
550.921
|
455.028
|
402.298
|
375.728
|
483.137
|
424.577
|
803.604
|
270.186
|
498.794
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.435
|
0.252
|
-0.167
|
-0.210
|
— |
0.372
|
— |
0.328
|
— | — | — | — | — |
No JSON data available for plots.