Hg_chrom6_TN10mRNA_12179
Organism: Heterodera glycines Gene Locus: chr6:5687946-5691387 Feature type: polypeptideProtein Sequence
Length: 813
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.373 | 1.144 | 0.492 | 0.297 | 0.759 | 2.649 | 0.63 | 1.169 | 0.957 | 1.396 | 0.745 | 1.23 | 0.82 | 1.396 | 0.904 | 1.511 | 0.645 | 0.671 | 0.852 | 0.253 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11483
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRGVGRPAGSKNKVEKQIKRNKDGRPRKRSQHTK
|
— | — |
20-52
|
0.961
|
— | — |
0.000
|
— | — |
0.871
|
0.092
|
0.021
|
0.324
|
0.052
|
0.037
|
0.044
|
0.013
|
0.076
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010560
|
1.000
|
1.000
|
Hsc_gene_7225.t1
|
Hsc_gene_7225.t1
|
— |
Q32LN0.1 ETS homologous factor [Bos taurus]
|
KAH7732152.1 Protein TAG-97 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006355|GO:0006357|GO:0043565
|
GO:0008150_0.920|GO:0009987_0.884|GO:0065007_0.863|GO:0050789_0.850|GO:0050794_0.837|GO:0005575_0.833|GO:0110165_0.831|GO:0005622_0.782|GO:0008152_0.762|GO:0043170_0.762|GO:0003674_0.760|GO:0019222_0.759|GO:0044238_0.759|GO:0080090_0.759|GO:0009058_0.756|GO:0031323_0.756|GO:0043226_0.756|GO:0044237_0.756|GO:0009059_0.755|GO:0044249_0.755|GO:0060255_0.751|GO:0010467_0.748|GO:0006139_0.745|GO:0005488_0.743|GO:0034654_0.742|GO:0043229_0.739|GO:0009889_0.737|GO:0010556_0.737|GO:0031326_0.737|GO:0010468_0.730|GO:0016070_0.729|GO:0090304_0.729|GO:0141187_0.728|GO:0016020_0.726|GO:0032774_0.726|GO:0019219_0.714|GO:0051252_0.714|GO:2001141_0.704|GO:0006351_0.703|GO:0006355_0.700|GO:0048518_0.696|GO:0048522_0.682|GO:0097159_0.679|GO:0003676_0.663|GO:0043227_0.653|GO:0006366_0.640|GO:0006357_0.636|GO:0043231_0.636|GO:0009893_0.626|GO:0031325_0.619|GO:0010604_0.616|GO:0009891_0.611|GO:0010557_0.608|GO:0031328_0.608|GO:0003677_0.607|GO:0043565_0.604|GO:0003690_0.601|GO:1990837_0.601|GO:0045935_0.592|GO:0051254_0.592|GO:0045893_0.581|GO:1902680_0.581|GO:0000976_0.535|GO:0001067_0.535|GO:0005634_0.529|GO:0045944_0.520|GO:0043228_0.517|GO:0043232_0.517|GO:0032502_0.510
|
IPR000418+697-789_698-711_698-785_699-784_724-742_743-761+|IPR003118+366-453_369-453_382-451+|IPR013761+376-451_381-453+|IPR036388+666-800+|IPR036390+689-793+|IPR046328+359-791+
|
SM00251+369-453+|SM00413+697-789+
|
PF00178+699-784+Ets-domain|PF02198+382-451+Sterile_alpha_motif_(SAM)/Pointed_domain
|
— |
PTHR11849+359-791+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-193;617-711
|
2.000
|
194-616;712-813
|
1wwx_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.925
|
88077.910
|
10.034
|
26.500
|
18.942
|
7.257
|
48.708
|
51.292
|
11.685
|
7.257
|
51.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2105.040
|
2787.993
|
4183.816
|
1493.129
|
1292.063
|
1589.745
|
1424.115
|
3453.128
|
1907.909
|
1694.623
|
1786.031
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.357
|
-1.038
|
-1.379
|
-0.240
|
0.314
|
— |
1.017
|
-1.137
|
— | — | — | — | — |
No JSON data available for plots.