Hg_chrom6_TN10mRNA_12181
Organism: Heterodera glycines Gene Locus: chr6:5698746-5703291 Feature type: polypeptideProtein Sequence
Length: 1,050
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.886 | 0.664 | 0.554 | 0.361 | 2.73 | 1.587 | 0.533 | 1.048 | 0.741 | 1.274 | 0.996 | 1.681 | 0.635 | 0.806 | 1.924 | 1.17 | 0.734 | 0.606 | 0.586 | 0.224 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11485
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRKR,RKRK,RKLRQELDEANEAKRVKKP
|
33-73
|
0.965
|
49-99
|
1.000
|
— | — |
0.001
|
— | — |
0.448
|
0.134
|
0.065
|
0.715
|
0.091
|
0.118
|
0.333
|
0.190
|
0.246
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001364
|
2.000
|
3.000
|
Hsc_gene_7222.t1;Hsc_gene_7222.t2;Hsc_gene_7222.t3
|
Hsc_gene_7222.t1;Hsc_gene_7222.t2;Hsc_gene_7222.t3
|
— |
Q11102.1 Putative protein tag-278 [Caenorhabditis elegans]
|
Q11102.1 Putative protein tag-278 [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.967|GO:0110165_0.964|GO:0005622_0.937|GO:0043226_0.899|GO:0043229_0.872|GO:0043228_0.808|GO:0043232_0.808|GO:0005737_0.787|GO:0005856_0.749|GO:0099080_0.714|GO:0015630_0.659|GO:0005815_0.608|GO:0005814_0.593|GO:0005813_0.585|GO:0035770_0.564|GO:0036464_0.563|GO:0005576_0.560|GO:0005615_0.558|GO:0000932_0.546|GO:0034451_0.540
|
IPR039478+231-389+
|
— |
PF15665+231-389+Family_with_sequence_similarity_184,_A_and_B
|
— |
PTHR18870+231-915+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
71-241;539-1050
|
2.000
|
1-70;242-538
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
120590.130
|
5.175
|
-25.000
|
37.524
|
5.905
|
59.238
|
40.762
|
18.095
|
19.429
|
39.905
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
849.562
|
2070.152
|
2921.562
|
749.810
|
504.097
|
615.419
|
348.707
|
2221.714
|
224.432
|
11.712
|
102.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.267
|
-1.603
|
-1.853
|
-0.604
|
0.302
|
-0.809
|
1.752
|
-2.530
|
— | — |
5.516
|
— | — |
No JSON data available for plots.