Hg_chrom6_TN10mRNA_12182
Organism: Heterodera glycines Gene Locus: chr6:5699218-5703291 Feature type: polypeptideProtein Sequence
Length: 983
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 0.615 | 0.555 | 0.351 | 2.882 | 1.643 | 0.509 | 0.916 | 0.633 | 1.251 | 1.033 | 1.735 | 0.622 | 0.841 | 1.993 | 1.148 | 0.734 | 0.57 | 0.47 | 0.18 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11485
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRKR,RKRK,RKLRQELDEANEAKRVKKP
|
— | — |
21-41
|
1.000
|
— | — |
0.000
|
— | — |
0.494
|
0.122
|
0.056
|
0.709
|
0.059
|
0.088
|
0.270
|
0.197
|
0.234
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001364
|
2.000
|
3.000
|
Hsc_gene_7222.t1;Hsc_gene_7222.t2;Hsc_gene_7222.t3
|
Hsc_gene_7222.t1;Hsc_gene_7222.t2;Hsc_gene_7222.t3
|
— |
Q11102.1 Putative protein tag-278 [Caenorhabditis elegans]
|
Q11102.1 Putative protein tag-278 [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.965|GO:0110165_0.962|GO:0005622_0.943|GO:0043226_0.903|GO:0043229_0.876|GO:0043228_0.831|GO:0043232_0.831|GO:0005737_0.791|GO:0005856_0.767|GO:0099080_0.724|GO:0015630_0.674|GO:0005815_0.615|GO:0005814_0.599|GO:0005813_0.592|GO:0035770_0.566|GO:0036464_0.565|GO:0005576_0.558|GO:0005615_0.557|GO:0000932_0.547|GO:0034451_0.540
|
IPR039478+164-322+
|
— |
PF15665+164-322+Family_with_sequence_similarity_184,_A_and_B
|
— |
PTHR18870+164-847+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-174;472-983
|
1.000
|
175-471
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
113115.500
|
5.039
|
-28.000
|
38.759
|
5.290
|
60.326
|
39.674
|
18.413
|
20.346
|
39.369
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
849.562
|
2070.152
|
2921.562
|
749.810
|
504.097
|
615.419
|
348.707
|
2221.714
|
224.432
|
11.712
|
102.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.267
|
-1.603
|
-1.853
|
-0.604
|
0.302
|
-0.809
|
1.752
|
-2.530
|
— | — |
5.516
|
— | — |
No JSON data available for plots.