Hg_chrom6_TN10mRNA_12184
Organism: Heterodera glycines Gene Locus: chr6:5706306-5706707 Feature type: polypeptideProtein Sequence
Length: 118
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.296 | 0.788 | 0.462 | 0.877 | 1.271 | 0.0 | 0.908 | 0.847 | 1.13 | 1.145 | 1.541 | 1.994 | 2.354 | 1.63 | 2.94 | 0.847 | 0.417 | 0.385 | 0.652 | 0.499 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11487
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
9-Not_Clustered
|
0.814
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
KRSRDKHRTVPGRIYGRRKPRPGAISFHPRKRKEEVNAKNGRKMKRKSGNEEEEKRMDEKKRRG
|
— | — |
6-28
|
0.894
|
— |
0.818
|
0.111
|
0.000
|
— |
0.712
|
0.280
|
0.083
|
0.373
|
0.075
|
0.006
|
0.012
|
0.006
|
0.061
|
0.276
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010563
|
1.000
|
1.000
|
Hsc_gene_7220.t1
|
Hsc_gene_7220.t1
|
— | — | — |
MER2013569
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
56-118
|
1.000
|
1-55
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
13986.490
|
11.435
|
18.000
|
36.441
|
12.712
|
48.305
|
51.695
|
26.271
|
10.169
|
38.136
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
970.181
|
376.896
|
3862.637
|
368.924
|
57.718
|
104.650
|
62.389
|
3311.009
|
1247.122
|
255.117
|
680.262
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.129
|
-0.168
|
-3.280
|
-2.708
|
0.872
|
-0.734
|
4.887
|
-5.588
|
— | — | — | — | — |