Hg_chrom6_TN10mRNA_12185
Organism: Heterodera glycines Gene Locus: chr6:5708422-5711772 Feature type: polypeptideProtein Sequence
Length: 723
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 0.868 | 0.754 | 0.429 | 2.397 | 1.419 | 0.609 | 0.622 | 0.645 | 1.439 | 1.195 | 1.871 | 0.538 | 0.479 | 2.004 | 1.027 | 1.066 | 0.419 | 0.426 | 0.285 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11488
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.756
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRKL,RRHELLVMKMKRMRKS,KKRELKTELEQLRKEKS,RRQKKRELKTELEQLRKEK
|
15-43
|
0.816
|
29-54
|
0.997
|
— | — |
0.000
|
— | — |
0.284
|
0.152
|
0.026
|
0.773
|
0.090
|
0.233
|
0.379
|
0.039
|
0.238
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010564
|
1.000
|
1.000
|
Hsc_gene_7219.t1
|
Hsc_gene_7219.t1;Hsc_gene_7219.t2
|
— | — |
KAH7732156.1 Protein C14H10.2 a [Aphelenchus avenae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-123;310-546;582-723
|
2.000
|
124-309;547-581
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.498
|
82819.170
|
6.325
|
-1.500
|
37.483
|
4.703
|
60.443
|
39.557
|
18.949
|
18.534
|
40.941
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1606.280
|
2611.123
|
768.702
|
1134.713
|
2497.415
|
3260.503
|
3182.331
|
1315.355
|
536.714
|
1086.136
|
850.669
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.994
|
-1.340
|
0.671
|
1.105
|
0.401
|
— |
-1.426
|
1.422
|
— | — | — | — | — |
No JSON data available for plots.