Hg_chrom6_TN10mRNA_12187
Organism: Heterodera glycines Gene Locus: chr6:5715041-5717463 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.348 | 0.741 | 0.896 | 1.399 | 0.918 | 0.892 | 0.897 | 1.304 | 1.61 | 1.097 | 0.791 | 1.023 | 0.966 | 0.78 | 0.946 | 0.994 | 0.855 | 0.966 | 0.892 | 0.853 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11489
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.539
|
0.335
|
0.020
|
0.680
|
0.085
|
0.123
|
0.093
|
0.109
|
0.137
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004401
|
2.000
|
1.000
|
Hsc_gene_7218.t1
|
— | — |
O31463.1 Homocysteine S-methyltransferase YbgG [Bacillus subtilis subsp. subtilis str. 168]
|
KAI1731981.1 homocysteine s-methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168|GO:0008270|GO:0009086
|
GO:0008150_0.912|GO:0003674_0.804|GO:0008152_0.744|GO:0003824_0.713|GO:0009987_0.663|GO:0016740_0.616|GO:0008168_0.577|GO:0016741_0.577|GO:0044237_0.549|GO:0005575_0.507
|
IPR003726+8-314_20-313+|IPR017226+19-235_275-323+|IPR036589+14-312_19-325+|IPR051486+17-315+
|
— |
PF02574+20-313+Homocysteine_S-methyltransferase
|
— |
PTHR46015+17-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
37408.930
|
6.911
|
2.500
|
22.899
|
10.145
|
41.739
|
58.261
|
12.464
|
10.435
|
53.913
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
848.729
|
376.864
|
349.276
|
720.443
|
830.180
|
655.787
|
970.451
|
447.742
|
857.750
|
1438.347
|
1189.520
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.339
|
0.798
|
1.153
|
0.173
|
-0.326
|
0.577
|
-0.658
|
1.260
|
— | — | — | — | — |
No JSON data available for plots.