Hg_chrom6_TN10mRNA_12188
Organism: Heterodera glycines Gene Locus: chr6:5717773-5720755 Feature type: polypeptideProtein Sequence
Length: 750
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 1.023 | 0.824 | 0.644 | 0.956 | 1.197 | 0.841 | 1.0 | 0.83 | 1.243 | 0.545 | 0.941 | 0.852 | 1.59 | 1.442 | 1.943 | 0.896 | 0.525 | 0.821 | 0.549 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11490
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.547
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KGPPR,KKLGHIKRICLALKKLRN
|
18-46
|
0.996
|
5-45
|
0.999
|
— | — |
0.000
|
— | — |
0.329
|
0.218
|
0.029
|
0.667
|
0.184
|
0.215
|
0.155
|
0.069
|
0.457
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004402
|
1.000
|
2.000
|
Hsc_gene_7217.t1;Hsc_gene_7217.t2
|
Hsc_gene_7217.t1;Hsc_gene_7217.t2
|
— |
Q8WXE0.2 Caskin-2 [Homo sapiens]
|
KAI1731980.1 SAM domain (Sterile alpha motif) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.865|GO:0110165_0.862|GO:0008150_0.753|GO:0009987_0.716|GO:0065007_0.624|GO:0050789_0.614|GO:0050794_0.606|GO:0005622_0.583|GO:0003674_0.574|GO:0016020_0.514
|
IPR001660+331-397_334-397_340-395_403-470_410-470_411-468+|IPR013761+335-396_340-399_402-470_406-473+|IPR033635+151-695+
|
SM00454+331-397_403-470+
|
PF00536+340-395_411-468+SAM_domain_(Sterile_alpha_motif)
|
— |
PTHR24174+151-695+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-247;554-750
|
1.000
|
248-553
|
8z8w_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.951
|
81454.990
|
7.891
|
10.500
|
22.933
|
8.000
|
51.067
|
48.933
|
12.667
|
10.267
|
56.400
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1202.507
|
3835.086
|
1263.648
|
924.287
|
866.482
|
1135.653
|
1756.097
|
1545.248
|
298.675
|
789.524
|
579.160
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.832
|
-2.190
|
-0.342
|
— |
0.405
|
0.640
|
0.341
|
0.327
|
— | — | — | — | — |
No JSON data available for plots.