SCN Proteipedia

Hg_chrom6_TN10mRNA_12192

Organism: Heterodera glycines Gene Locus: chr6:5736898-5746201 Feature type: polypeptide

Protein Sequence

Length: 1,788

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.709	0.611	0.671	0.039	2.61	1.42	0.666	0.839	0.882	0.922	1.025	1.546	0.621	0.871	2.328	1.182	0.972	0.576	0.559	0.559	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11494	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRKL,KRRRR,REWKRKV,KKGREEEESEMKRKME,RRRGIEREEEGRRKEE,RKLATDLDFLNKRWGK,KRRLEILDEDLKALRR,KRRRIEREEEEERKRME,RKGKEERAEEIGEKVRDK,KKAKAMEEEMDTLKKKNA,KRKVVEERSAVEEEMRRRT,RKVVEERSAVEEEMRRRTT,RRKEEGEQTFRIWEEKRKV,RKEEGEQTFRIWEEKRKVD,RRIEREEEGRRMEEEKVRR,RRIEEERIRMEEEKLIKRK,RKRMEEEKLIILREEKRRR,KRMEEEKLIILREEKRRRL,RKEEEEYKIRMWEEKRKVE,KRRNEEERIRMEEEELRRK,RRNEEERIRMEEEELRRKE,KRRTEEQRMREDEERRRRE,RRTEEQRMREDEERRRREE,KKLLEETQRQKDELEKKAK,KGRGRDEGRGKEQRIREEEKRRTEEQRMREDEERRRR	41-122	0.879	96-116	0.985	—	—	0.000	—	—	0.395	0.132	0.067	0.670	0.086	0.124	0.136	0.042	0.413	0.179

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002326	2.000	2.000	Hsc_gene_7212.t1;Hsc_gene_7212.t2	Hsc_gene_7212.t1;Hsc_gene_7212.t2;Hsc_gene_7213.t1	—	P23730.1 Intermediate filament protein A [Ascaris suum]	KAH7732187.1 cytoplasmic intermediate filament protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.955\|GO:0110165_0.955\|GO:0005622_0.824\|GO:0043226_0.765\|GO:0043229_0.741\|GO:0043228_0.695\|GO:0043232_0.695\|GO:0005856_0.618\|GO:0008150_0.603\|GO:0016020_0.575\|GO:0009987_0.557\|GO:0099080_0.506	IPR001322+1668-1785+\|IPR018039+1621-1629+\|IPR036415+1644-1784_1644-1786+\|IPR039008+1281-1634_1282-1634_1282-1635+	SM01391+1281-1634+	PF00038+1282-1634+Intermediate_filament_protein	G3DSA:1.20.5.170:FF:000058+1557-1635+Intermediate_filament_protein_B\|G3DSA:2.60.40.1260:FF:000003+1645-1787+Intermediate_filament_protein_A	PTHR45721+1219-1785+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	108-690;857-1386;1769-1788	3.000	1-107;691-856;1387-1768	2lll_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.573	207032.450	6.269	-6.000	39.206	6.544	61.577	38.423	19.855	19.351	40.660

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	12306.230	32136.910	20971.769	6599.590	4207.294	5867.184	6352.852	9723.953	15815.477	9780.816	12367.099

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.845	-2.421	-1.560	-0.681	0.494	—	0.627	-0.472	—	—	—	—	—

No JSON data available for plots.

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