Hg_chrom6_TN10mRNA_12195
Organism: Heterodera glycines Gene Locus: chr6:5753482-5756419 Feature type: polypeptideProtein Sequence
Length: 503
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.832 | 0.694 | 0.578 | 0.411 | 1.259 | 1.784 | 0.828 | 2.087 | 1.104 | 1.236 | 0.663 | 1.053 | 1.822 | 1.109 | 1.542 | 0.966 | 0.88 | 0.753 | 0.918 | 0.409 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11496
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
chloroplast
|
— |
49-69
|
0.979
|
19-59
|
0.957
|
1-25
|
0.909
|
1.000
|
1.000
|
1.000
|
0.270
|
0.024
|
0.020
|
0.338
|
0.372
|
0.624
|
0.487
|
0.072
|
0.655
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010569
|
1.000
|
1.000
|
Hsc_gene_7210.t1
|
Hsc_gene_7210.t1
|
— | — |
KAI1725512.1 sarcoglycan alpha/epsilon domain-containing protein [Ditylenchus destructor]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0016012|GO:0016020
|
GO:0005575_0.790|GO:0110165_0.784|GO:0008150_0.766|GO:0016020_0.719|GO:0071944_0.683|GO:0005886_0.669|GO:0009987_0.538
|
IPR008908+29-397+|IPR015919+32-122+
|
— | — | — |
PTHR10132+29-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
273-317;387-503
|
2.000
|
1-272;318-386
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
57087.940
|
8.928
|
16.500
|
26.839
|
13.320
|
48.907
|
51.093
|
16.103
|
10.736
|
44.334
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
267.443
|
568.904
|
732.282
|
308.399
|
143.746
|
202.180
|
59.021
|
750.219
|
143.388
|
25.739
|
76.160
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.134
|
-1.020
|
-1.139
|
-1.131
|
0.505
|
-1.766
|
1.789
|
-3.526
|
— | — | — | — | — |