Hg_chrom6_TN10mRNA_12199
Organism: Heterodera glycines Gene Locus: chr6:5766549-5769392 Feature type: polypeptideProtein Sequence
Length: 801
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.827 | 1.423 | 0.567 | 0.0 | 1.935 | 1.889 | 0.951 | 0.874 | 0.777 | 0.675 | 1.059 | 1.909 | 0.694 | 1.513 | 0.943 | 0.999 | 1.699 | 0.359 | 0.384 | 0.294 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11500
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RKSK,AKKTK,KKEEETTVDSRNKTK,EQKMAKKNKRRKKGRRK,KKTKEDEQKMAKKNKRRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.320
|
0.278
|
0.026
|
0.356
|
0.083
|
0.011
|
0.106
|
0.069
|
0.209
|
0.816
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004403
|
1.000
|
2.000
|
Hsc_gene_7206.t1;Hsc_gene_7206.t2
|
Hsc_gene_7206.t1
|
— | — |
KAF7639608.1 hypothetical protein Mgra_00000932 [Meloidogyne graminicola]
|
No
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-542;581-801
|
1.000
|
543-580
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
88002.860
|
5.033
|
-18.000
|
28.090
|
5.743
|
58.926
|
41.074
|
13.358
|
14.732
|
51.935
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
483.812
|
274.438
|
188.867
|
178.960
|
609.136
|
931.234
|
493.118
|
233.366
|
265.188
|
826.865
|
586.146
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.770
|
-0.754
|
— |
1.735
|
0.629
|
-0.908
|
-2.110
|
1.224
|
— | — | — | — | — |
No JSON data available for plots.