Hg_chrom6_TN10mRNA_12204
Organism: Heterodera glycines Gene Locus: chr6:5780167-5787038 Feature type: polypeptideProtein Sequence
Length: 961
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.605 | 0.75 | 1.097 | 0.969 | 1.231 | 1.227 | 0.78 | 1.613 | 1.041 | 0.914 | 1.34 | 1.163 | 1.705 | 1.201 | 1.295 | 0.877 | 0.904 | 0.773 | 0.8 | 0.582 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11504
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRRQQQKGSRRKCM,KKTEEDDGQKKQKRKRKKE,KKERKGQPNDAKATEGRRR,RKGQPNDAKATEGRRRKAA,RRSGDSPRRRRQQQKGSRR
|
— | — |
36-57
|
0.995
|
— | — |
0.000
|
— | — |
0.357
|
0.141
|
0.032
|
0.668
|
0.243
|
0.371
|
0.255
|
0.025
|
0.547
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000598
|
4.000
|
3.000
|
Hsc_gene_7202.t1;Hsc_gene_7202.t2;Hsc_gene_7202.t3
|
Hsc_gene_7202.t1;Hsc_gene_7202.t2;Hsc_gene_7202.t3
|
— |
P90980.2 Protein kinase C-like 2 [Caenorhabditis elegans]
|
KAI6229340.1 Protein kinase C [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004674|GO:0005524|GO:0006468
|
GO:0008150_0.953|GO:0065007_0.950|GO:0009987_0.941|GO:0050789_0.911|GO:0050794_0.907|GO:0003674_0.884|GO:0003824_0.884|GO:0004672_0.884|GO:0016301_0.884|GO:0016740_0.884|GO:0016772_0.884|GO:0016773_0.884|GO:0140096_0.884|GO:0004674_0.876|GO:0050896_0.866|GO:0005575_0.841|GO:0110165_0.838|GO:0005622_0.795|GO:0048518_0.791|GO:0007154_0.780|GO:0023052_0.780|GO:0032501_0.779|GO:0051716_0.742|GO:0048522_0.718|GO:0007165_0.710|GO:0048519_0.691|GO:0071944_0.689|GO:0032502_0.688|GO:0016020_0.673|GO:0023051_0.670|GO:0010646_0.669|GO:0071840_0.665|GO:0048583_0.664|GO:0032879_0.659|GO:0051179_0.659|GO:0016043_0.658|GO:0005886_0.657|GO:0048856_0.652|GO:0006810_0.639|GO:0051049_0.639|GO:0051234_0.639|GO:0008152_0.601|GO:0019538_0.601|GO:0042221_0.601|GO:0043170_0.601|GO:0044238_0.601|GO:0036211_0.598|GO:0043412_0.598|GO:0048523_0.585|GO:0006793_0.581|GO:0006796_0.581|GO:0016310_0.581|GO:0044237_0.581|GO:0005737_0.576|GO:0006996_0.568|GO:0006468_0.566|GO:0009966_0.545|GO:0007275_0.544|GO:0035556_0.541|GO:0030054_0.538|GO:0005488_0.530|GO:0006950_0.523|GO:0019222_0.501
|
IPR000008+428-547_441-549_442-547_458-470_489-502_512-520+|IPR000719+623-881_625-868+|IPR000961+882-945_882-953+|IPR002219+306-356_307-356_307-357_371-421_372-421_372-423+|IPR008271+743-755+|IPR011009+621-946+|IPR017441+629-652+|IPR017892+902-943+|IPR020454+304-318_320-329_333-344_410-422+|IPR035892+426-564_432-554+|IPR046349+291-357_369-424+|IPR050236+162-945+
|
SM00109+307-356_372-421+|SM00133+882-945+|SM00220+623-881+|SM00239+442-547+
|
PF00069+625-868+Protein_kinase_domain|PF00130+307-357_372-423+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)|PF00168+441-549+C2_domain|PF00433+902-943+Protein_kinase_C_terminal_domain
|
G3DSA:1.10.510.10:FF:000023+708-901+Protein_kinase_C|G3DSA:2.60.40.150:FF:000012+426-564+Kinase_C_alpha_type|G3DSA:3.30.200.20:FF:000080+606-729+Protein_kinase_C|G3DSA:3.30.60.20:FF:000006+291-360+Protein_kinase_C
|
PTHR24356+162-945+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;48-257;563-607;957-961
|
3.000
|
5-47;258-562;608-956
|
8se4_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
109664.920
|
8.608
|
32.500
|
31.842
|
12.383
|
51.509
|
48.491
|
18.418
|
13.424
|
46.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
3156.992
|
2069.321
|
7342.609
|
3683.879
|
2861.864
|
4150.852
|
3367.800
|
8692.253
|
589.639
|
1306.396
|
999.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.598
|
0.695
|
-0.887
|
-0.396
|
0.550
|
-0.291
|
0.966
|
-1.227
|
— | — | — | — | — |
No JSON data available for plots.