Hg_chrom6_TN10mRNA_12206
Organism: Heterodera glycines Gene Locus: chr6:5782242-5787038 Feature type: polypeptideProtein Sequence
Length: 723
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.515 | 0.901 | 1.257 | 1.002 | 1.13 | 1.17 | 0.889 | 1.798 | 1.229 | 0.991 | 1.278 | 1.383 | 1.767 | 0.984 | 0.988 | 0.711 | 0.884 | 0.838 | 0.958 | 0.692 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11504
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
49-77
|
0.941
|
— | — | — | — |
0.000
|
— | — |
0.385
|
0.152
|
0.018
|
0.666
|
0.142
|
0.509
|
0.238
|
0.013
|
0.528
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000598
|
4.000
|
3.000
|
Hsc_gene_7202.t1;Hsc_gene_7202.t2;Hsc_gene_7202.t3
|
Hsc_gene_7202.t1;Hsc_gene_7202.t2;Hsc_gene_7202.t3
|
— |
P90980.2 Protein kinase C-like 2 [Caenorhabditis elegans]
|
KAI6229340.1 Protein kinase C [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004674|GO:0004697|GO:0005524|GO:0006468|GO:0008270
|
GO:0008150_0.951|GO:0065007_0.942|GO:0009987_0.931|GO:0050789_0.901|GO:0050794_0.893|GO:0003674_0.883|GO:0003824_0.883|GO:0004672_0.883|GO:0016301_0.883|GO:0016740_0.883|GO:0016772_0.883|GO:0016773_0.883|GO:0140096_0.883|GO:0004674_0.873|GO:0050896_0.863|GO:0005575_0.808|GO:0110165_0.804|GO:0007154_0.772|GO:0023052_0.772|GO:0048518_0.766|GO:0005622_0.754|GO:0032501_0.751|GO:0051716_0.737|GO:0007165_0.703|GO:0048522_0.691|GO:0071944_0.670|GO:0048519_0.660|GO:0032502_0.658|GO:0023051_0.652|GO:0010646_0.651|GO:0005886_0.645|GO:0016020_0.645|GO:0048583_0.645|GO:0032879_0.642|GO:0051179_0.642|GO:0071840_0.634|GO:0006810_0.626|GO:0051049_0.626|GO:0051234_0.626|GO:0016043_0.625|GO:0048856_0.617|GO:0008152_0.605|GO:0019538_0.605|GO:0043170_0.605|GO:0044238_0.605|GO:0042221_0.601|GO:0036211_0.600|GO:0043412_0.600|GO:0005737_0.597|GO:0006793_0.581|GO:0006796_0.581|GO:0016310_0.581|GO:0044237_0.581|GO:0006468_0.564|GO:0048523_0.554|GO:0006996_0.539|GO:0006950_0.526|GO:0009966_0.523|GO:0035556_0.523|GO:0007275_0.505
|
IPR000008+190-309_203-311_204-309_220-232_251-264_274-282+|IPR000719+385-643_387-630+|IPR000961+644-707_644-715+|IPR002219+68-118_69-118_69-119_133-183_134-183_134-185+|IPR008271+505-517+|IPR011009+383-708+|IPR014375+32-716+|IPR017441+391-414+|IPR017892+664-705+|IPR020454+66-80_82-91_95-106_172-184+|IPR035892+188-326_194-316+|IPR046349+53-119_131-186+|IPR050236+43-707+
|
SM00109+69-118_134-183+|SM00133+644-707+|SM00220+385-643+|SM00239+204-309+
|
PF00069+387-630+Protein_kinase_domain|PF00130+69-119_134-185+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)|PF00168+203-311+C2_domain|PF00433+664-705+Protein_kinase_C_terminal_domain
|
G3DSA:1.10.510.10:FF:000023+470-663+Protein_kinase_C|G3DSA:2.60.40.150:FF:000012+188-326+Kinase_C_alpha_type|G3DSA:3.30.200.20:FF:000080+368-491+Protein_kinase_C|G3DSA:3.30.60.20:FF:000006+53-122+Protein_kinase_C
|
PTHR24356+43-707+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56;325-369;719-723
|
2.000
|
57-324;370-718
|
4ra4_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
82505.080
|
7.201
|
10.000
|
30.567
|
13.555
|
49.378
|
50.622
|
16.874
|
13.693
|
46.611
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
3156.992
|
2069.321
|
7342.609
|
3683.879
|
2861.864
|
4150.852
|
3367.800
|
8692.253
|
589.639
|
1306.396
|
999.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.598
|
0.695
|
-0.887
|
-0.396
|
0.550
|
-0.291
|
0.966
|
-1.227
|
— | — | — | — | — |
No JSON data available for plots.