Hg_chrom6_TN10mRNA_12207
Organism: Heterodera glycines Gene Locus: chr6:5789277-5792082 Feature type: polypeptideProtein Sequence
Length: 541
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.161 | 1.505 | 0.471 | 0.829 | 0.462 | 1.09 | 0.638 | 0.462 | 1.068 | 1.499 | 0.504 | 0.979 | 1.643 | 1.209 | 1.245 | 1.584 | 0.788 | 0.98 | 1.564 | 0.489 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11505
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
47-75
|
0.878
|
— | — | — | — |
0.000
|
— | — |
0.165
|
0.055
|
0.002
|
0.146
|
0.166
|
0.284
|
0.185
|
0.001
|
0.816
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002327
|
1.000
|
3.000
|
Hsc_gene_11282.t1;Hsc_gene_6509.t1;Hsc_gene_7201.t1
|
Hsc_gene_7201.t1
|
— |
P41596.2 Dopamine receptor 1 [Drosophila melanogaster]
|
WRV86326.1 ser-4 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.971|GO:0009987_0.935|GO:0065007_0.905|GO:0050789_0.884|GO:0005575_0.873|GO:0110165_0.873|GO:0050794_0.864|GO:0050896_0.841|GO:0003674_0.828|GO:0051716_0.820|GO:0023052_0.807|GO:0007154_0.797|GO:0007165_0.774|GO:0007186_0.726|GO:0016020_0.680|GO:0060089_0.679|GO:0038023_0.676|GO:0005622_0.649|GO:0032501_0.631|GO:0071944_0.612|GO:0005886_0.597|GO:0023051_0.588|GO:0010646_0.587|GO:0048583_0.572|GO:0009966_0.562|GO:0035556_0.550|GO:0141124_0.549|GO:1902531_0.522
|
IPR000276+30-54_39-477_45-462_64-85_109-131_115-131_201-224_407-431_444-470+|IPR017452+45-462+
|
SM01381+39-477+
|
PF00001+45-462+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24248+23-477+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
270-374
|
2.000
|
1-269;375-541
|
7um7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.937
|
59251.270
|
10.157
|
24.500
|
15.712
|
10.536
|
42.329
|
57.671
|
10.351
|
5.360
|
55.453
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1264.117
|
665.256
|
1398.001
|
1450.913
|
477.482
|
208.886
|
113.695
|
790.322
|
1075.901
|
2809.376
|
2066.459
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
0.988
|
0.162
|
-1.634
|
-1.179
|
-0.869
|
1.818
|
-2.658
|
— | — |
-2.297
|
— | — |
No JSON data available for plots.